bids_bep16_conv.processing.dipy_csd¶

bids_bep16_conv.processing.dipy_csd(input_files, bval, bvec, mask, outdir)[source]¶

Setup DIPY dipy_fit_CSD command.

Parameters:

input_files (str) – Path to dwi image.
bval (str) – Path to bval image.
bvec (str) – Path to bvec image.
mask (str) – Path to mask image.
outdir (str) – Output path.

Return type:

Output files generated by dipy_fit_CSD in specified output directory .

Examples

Run dipy_fit_CSD on local data and save it to the Desktop.

>>> dipy_csd('sub-01_desc-preproc_dwi.nii.gz',
             'sub-01_desc-preproc_dwi.bval',
             'sub-01_desc-preproc_dwi.bvec',
             'sub-01_desc-brain_mask.nii.gz',
             '/home/user/Desktop)