bids_bep16_conv.processing.mrtrix_dti¶

bids_bep16_conv.processing.mrtrix_dti(input_files, bval, bvec, mask, outdir)[source]¶

Setup a succession of MRTRIX dwi2tensor & tensor2metric command.

Parameters:

input_files (str) – Path to dwi image.
bval (str) – Path to bval image.
bvec (str) – Path to bvec image.
mask (str) – Path to mask image.
outdir (str) – Output path.

Return type:

Output files generated by dwi2tensor & tensor2metric in specified output directory .

Examples

Run dwi2tensor & tensor2metric on local data and save it to the Desktop.

>>> mrtrix_dti('sub-01_desc-preproc_dwi.nii.gz',
               'sub-01_desc-preproc_dwi.bval',
               'sub-01_desc-preproc_dwi.bvec',
               'sub-01_desc-brain_mask.nii.gz',
               '/home/user/Desktop)