Example 4: 2nd-level Analysis¶
Last but not least, the 2nd-level analysis. After we removed left-handed subjects and normalized all subject data into template space, we can now do the group analysis. To show the flexibility of Nipype, we will run the group analysis on data with two different smoothing kernel (fwhm= [4, 8]) and two different normalizations (ANTs and SPM).
This example will also directly include thresholding of the output, as well as some visualization.
Let’s start!
Group Analysis with SPM¶
Let’s first run the group analysis with the SPM normalized data.
Imports (SPM12)¶
First, we need to import all the modules we later want to use.
from nilearn import plotting
%matplotlib inline
from os.path import join as opj
from nipype.interfaces.io import SelectFiles, DataSink
from nipype.interfaces.spm import (OneSampleTTestDesign, EstimateModel,
EstimateContrast, Threshold)
from nipype.interfaces.utility import IdentityInterface
from nipype import Workflow, Node
from nipype.interfaces.fsl import Info
from nipype.algorithms.misc import Gunzip
Experiment parameters (SPM12)¶
It’s always a good idea to specify all parameters that might change between experiments at the beginning of your script.
experiment_dir = '/output'
output_dir = 'datasink'
working_dir = 'workingdir'
# Smoothing withds used during preprocessing
fwhm = [4, 8]
# Which contrasts to use for the 2nd-level analysis
contrast_list = ['con_0001', 'con_0002', 'con_0003', 'con_0004', 'con_0005', 'con_0006', 'con_0007']
mask = "/data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_brainmask.nii.gz"
Specify Nodes (SPM12)¶
Initiate all the different interfaces (represented as nodes) that you want to use in your workflow.
# Gunzip - unzip the mask image
gunzip = Node(Gunzip(in_file=mask), name="gunzip")
# OneSampleTTestDesign - creates one sample T-Test Design
onesamplettestdes = Node(OneSampleTTestDesign(),
name="onesampttestdes")
# EstimateModel - estimates the model
level2estimate = Node(EstimateModel(estimation_method={'Classical': 1}),
name="level2estimate")
# EstimateContrast - estimates group contrast
level2conestimate = Node(EstimateContrast(group_contrast=True),
name="level2conestimate")
cont1 = ['Group', 'T', ['mean'], [1]]
level2conestimate.inputs.contrasts = [cont1]
# Threshold - thresholds contrasts
level2thresh = Node(Threshold(contrast_index=1,
use_topo_fdr=True,
use_fwe_correction=False,
extent_threshold=0,
height_threshold=0.005,
height_threshold_type='p-value',
extent_fdr_p_threshold=0.05),
name="level2thresh")
Specify input & output stream (SPM12)¶
Specify where the input data can be found & where and how to save the output data.
# Infosource - a function free node to iterate over the list of subject names
infosource = Node(IdentityInterface(fields=['contrast_id', 'fwhm_id']),
name="infosource")
infosource.iterables = [('contrast_id', contrast_list),
('fwhm_id', fwhm)]
# SelectFiles - to grab the data (alternativ to DataGrabber)
templates = {'cons': opj(output_dir, 'norm_spm', 'sub-*_fwhm{fwhm_id}',
'w{contrast_id}.nii')}
selectfiles = Node(SelectFiles(templates,
base_directory=experiment_dir,
sort_filelist=True),
name="selectfiles")
# Datasink - creates output folder for important outputs
datasink = Node(DataSink(base_directory=experiment_dir,
container=output_dir),
name="datasink")
# Use the following DataSink output substitutions
substitutions = [('_contrast_id_', '')]
subjFolders = [('%s_fwhm_id_%s' % (con, f), 'spm_%s_fwhm%s' % (con, f))
for f in fwhm
for con in contrast_list]
substitutions.extend(subjFolders)
datasink.inputs.substitutions = substitutions
Specify Workflow (SPM12)¶
Create a workflow and connect the interface nodes and the I/O stream to each other.
# Initiation of the 2nd-level analysis workflow
l2analysis = Workflow(name='spm_l2analysis')
l2analysis.base_dir = opj(experiment_dir, working_dir)
# Connect up the 2nd-level analysis components
l2analysis.connect([(infosource, selectfiles, [('contrast_id', 'contrast_id'),
('fwhm_id', 'fwhm_id')]),
(selectfiles, onesamplettestdes, [('cons', 'in_files')]),
(gunzip, onesamplettestdes, [('out_file',
'explicit_mask_file')]),
(onesamplettestdes, level2estimate, [('spm_mat_file',
'spm_mat_file')]),
(level2estimate, level2conestimate, [('spm_mat_file',
'spm_mat_file'),
('beta_images',
'beta_images'),
('residual_image',
'residual_image')]),
(level2conestimate, level2thresh, [('spm_mat_file',
'spm_mat_file'),
('spmT_images',
'stat_image'),
]),
(level2conestimate, datasink, [('spm_mat_file',
'2ndLevel.@spm_mat'),
('spmT_images',
'2ndLevel.@T'),
('con_images',
'2ndLevel.@con')]),
(level2thresh, datasink, [('thresholded_map',
'2ndLevel.@threshold')]),
])
Visualize the workflow (SPM12)¶
It always helps to visualize your workflow.
# Create 1st-level analysis output graph
l2analysis.write_graph(graph2use='colored', format='png', simple_form=True)
# Visualize the graph
from IPython.display import Image
Image(filename=opj(l2analysis.base_dir, 'spm_l2analysis', 'graph.png'))
211018-12:45:20,987 nipype.workflow INFO:
Generated workflow graph: /output/workingdir/spm_l2analysis/graph.png (graph2use=colored, simple_form=True).
Run the Workflow (SPM12)¶
Now that everything is ready, we can run the 1st-level analysis workflow. Change n_procs to the number of jobs/cores you want to use.
l2analysis.run('MultiProc', plugin_args={'n_procs': 4})
211018-12:45:23,614 nipype.workflow INFO:
Workflow spm_l2analysis settings: ['check', 'execution', 'logging', 'monitoring']
211018-12:45:23,685 nipype.workflow INFO:
Running in parallel.
211018-12:45:23,690 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 15 jobs ready. Free memory (GB): 5.23/5.23, Free processors: 4/4.
211018-12:45:23,799 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.selectfiles" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0006_fwhm_id_8/selectfiles".
211018-12:45:23,799 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.selectfiles" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0006_fwhm_id_4/selectfiles".
211018-12:45:23,798 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.selectfiles" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0007_fwhm_id_4/selectfiles".
211018-12:45:23,798 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.selectfiles" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0007_fwhm_id_8/selectfiles".
211018-12:45:23,808 nipype.workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
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[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
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[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
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[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
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[Node] Finished "spm_l2analysis.selectfiles".
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[Job 0] Completed (spm_l2analysis.selectfiles).
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[Job 1] Completed (spm_l2analysis.selectfiles).
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211018-12:45:25,877 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.selectfiles" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0005_fwhm_id_8/selectfiles".
211018-12:45:25,880 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.selectfiles" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0005_fwhm_id_4/selectfiles".
211018-12:45:25,881 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.selectfiles" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0004_fwhm_id_4/selectfiles".
211018-12:45:25,881 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.selectfiles" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0004_fwhm_id_8/selectfiles".
211018-12:45:25,891 nipype.workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
211018-12:45:25,891 nipype.workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
211018-12:45:25,900 nipype.workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
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[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
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[MultiProc] Running 0 tasks, and 7 jobs ready. Free memory (GB): 5.23/5.23, Free processors: 4/4.
211018-12:45:27,784 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.selectfiles" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0003_fwhm_id_4/selectfiles".
211018-12:45:27,782 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.selectfiles" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0003_fwhm_id_8/selectfiles".
211018-12:45:27,784 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.selectfiles" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0002_fwhm_id_4/selectfiles".
211018-12:45:27,784 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.selectfiles" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0002_fwhm_id_8/selectfiles".
211018-12:45:27,791 nipype.workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
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[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
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[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
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[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
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211018-12:45:29,790 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.selectfiles" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0001_fwhm_id_4/selectfiles".
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[Node] Setting-up "spm_l2analysis.gunzip" in "/output/workingdir/spm_l2analysis/gunzip".
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[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
211018-12:45:29,796 nipype.workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
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[Node] Running "gunzip" ("nipype.algorithms.misc.Gunzip")
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211018-12:45:31,787 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.onesampttestdes" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0006_fwhm_id_4/onesampttestdes".
211018-12:45:31,787 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.onesampttestdes" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0007_fwhm_id_4/onesampttestdes".
211018-12:45:31,787 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.onesampttestdes" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0007_fwhm_id_8/onesampttestdes".
211018-12:45:31,787 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.onesampttestdes" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0006_fwhm_id_8/onesampttestdes".
211018-12:45:31,802 nipype.workflow INFO:
[Node] Running "onesampttestdes" ("nipype.interfaces.spm.model.OneSampleTTestDesign")
211018-12:45:31,802 nipype.workflow INFO:
[Node] Running "onesampttestdes" ("nipype.interfaces.spm.model.OneSampleTTestDesign")
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[Node] Running "onesampttestdes" ("nipype.interfaces.spm.model.OneSampleTTestDesign")
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[Node] Running "onesampttestdes" ("nipype.interfaces.spm.model.OneSampleTTestDesign")
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[MultiProc] Running 4 tasks, and 10 jobs ready. Free memory (GB): 4.43/5.23, Free processors: 0/4.
Currently running:
* spm_l2analysis.onesampttestdes
* spm_l2analysis.onesampttestdes
* spm_l2analysis.onesampttestdes
* spm_l2analysis.onesampttestdes
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211018-12:45:41,796 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2estimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0007_fwhm_id_8/level2estimate".
211018-12:45:41,798 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2estimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0006_fwhm_id_8/level2estimate".
211018-12:45:41,797 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2estimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0007_fwhm_id_4/level2estimate".
211018-12:45:41,801 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2estimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0006_fwhm_id_4/level2estimate".
211018-12:45:41,813 nipype.workflow INFO:
[Node] Running "level2estimate" ("nipype.interfaces.spm.model.EstimateModel")
211018-12:45:41,812 nipype.workflow INFO:
[Node] Running "level2estimate" ("nipype.interfaces.spm.model.EstimateModel")
211018-12:45:41,813 nipype.workflow INFO:
[Node] Running "level2estimate" ("nipype.interfaces.spm.model.EstimateModel")
211018-12:45:41,814 nipype.workflow INFO:
[Node] Running "level2estimate" ("nipype.interfaces.spm.model.EstimateModel")
211018-12:45:43,717 nipype.workflow INFO:
[MultiProc] Running 4 tasks, and 10 jobs ready. Free memory (GB): 4.43/5.23, Free processors: 0/4.
Currently running:
* spm_l2analysis.level2estimate
* spm_l2analysis.level2estimate
* spm_l2analysis.level2estimate
* spm_l2analysis.level2estimate
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[Node] Setting-up "spm_l2analysis.level2conestimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0007_fwhm_id_8/level2conestimate".
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[Node] Setting-up "spm_l2analysis.level2conestimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0007_fwhm_id_4/level2conestimate".
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[Node] Setting-up "spm_l2analysis.level2conestimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0006_fwhm_id_4/level2conestimate".
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[Node] Setting-up "spm_l2analysis.level2conestimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0006_fwhm_id_8/level2conestimate".
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[Node] Running "level2conestimate" ("nipype.interfaces.spm.model.EstimateContrast")
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[Node] Running "level2conestimate" ("nipype.interfaces.spm.model.EstimateContrast")
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[Node] Running "level2conestimate" ("nipype.interfaces.spm.model.EstimateContrast")
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[Node] Running "level2conestimate" ("nipype.interfaces.spm.model.EstimateContrast")
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[MultiProc] Running 4 tasks, and 10 jobs ready. Free memory (GB): 4.43/5.23, Free processors: 0/4.
Currently running:
* spm_l2analysis.level2conestimate
* spm_l2analysis.level2conestimate
* spm_l2analysis.level2conestimate
* spm_l2analysis.level2conestimate
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[MultiProc] Running 0 tasks, and 14 jobs ready. Free memory (GB): 5.23/5.23, Free processors: 4/4.
211018-12:47:32,800 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2thresh" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0007_fwhm_id_8/level2thresh".
211018-12:47:32,800 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2thresh" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0007_fwhm_id_4/level2thresh".
211018-12:47:32,802 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2thresh" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0006_fwhm_id_4/level2thresh".
211018-12:47:32,800 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2thresh" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0006_fwhm_id_8/level2thresh".
211018-12:47:32,830 nipype.workflow INFO:
[Node] Running "level2thresh" ("nipype.interfaces.spm.model.Threshold")
211018-12:47:32,829 nipype.workflow INFO:
[Node] Running "level2thresh" ("nipype.interfaces.spm.model.Threshold")
211018-12:47:32,848 nipype.workflow INFO:
[Node] Running "level2thresh" ("nipype.interfaces.spm.model.Threshold")
211018-12:47:32,852 nipype.workflow INFO:
[Node] Running "level2thresh" ("nipype.interfaces.spm.model.Threshold")
211018-12:47:34,719 nipype.workflow INFO:
[MultiProc] Running 4 tasks, and 10 jobs ready. Free memory (GB): 4.43/5.23, Free processors: 0/4.
Currently running:
* spm_l2analysis.level2thresh
* spm_l2analysis.level2thresh
* spm_l2analysis.level2thresh
* spm_l2analysis.level2thresh
211018-12:47:38,562 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2thresh".
211018-12:47:38,583 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2thresh".
211018-12:47:38,646 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2thresh".
211018-12:47:38,658 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2thresh".
211018-12:47:38,725 nipype.workflow INFO:
[Job 18] Completed (spm_l2analysis.level2thresh).
211018-12:47:38,730 nipype.workflow INFO:
[Job 23] Completed (spm_l2analysis.level2thresh).
211018-12:47:38,734 nipype.workflow INFO:
[Job 28] Completed (spm_l2analysis.level2thresh).
211018-12:47:38,737 nipype.workflow INFO:
[Job 33] Completed (spm_l2analysis.level2thresh).
211018-12:47:38,742 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 14 jobs ready. Free memory (GB): 5.23/5.23, Free processors: 4/4.
211018-12:47:38,825 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.datasink" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0007_fwhm_id_8/datasink".
211018-12:47:38,824 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.datasink" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0006_fwhm_id_4/datasink".
211018-12:47:38,825 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.datasink" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0006_fwhm_id_8/datasink".
211018-12:47:38,824 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.datasink" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0007_fwhm_id_4/datasink".
211018-12:47:38,873 nipype.workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
211018-12:47:38,873 nipype.workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
211018-12:47:38,873 nipype.workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
211018-12:47:38,879 nipype.workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
211018-12:47:38,878 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0006_fwhm_id_8/SPM.mat -> /output/datasink/2ndLevel/spm_con_0006_fwhm8/SPM.mat
211018-12:47:38,880 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0007_fwhm_id_4/SPM.mat -> /output/datasink/2ndLevel/spm_con_0007_fwhm4/SPM.mat
211018-12:47:38,884 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0007_fwhm_id_4/spmT_0001.nii -> /output/datasink/2ndLevel/spm_con_0007_fwhm4/spmT_0001.nii
211018-12:47:38,884 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0006_fwhm_id_4/SPM.mat -> /output/datasink/2ndLevel/spm_con_0006_fwhm4/SPM.mat
211018-12:47:38,882 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0007_fwhm_id_8/SPM.mat -> /output/datasink/2ndLevel/spm_con_0007_fwhm8/SPM.mat
211018-12:47:38,888 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0006_fwhm_id_4/spmT_0001.nii -> /output/datasink/2ndLevel/spm_con_0006_fwhm4/spmT_0001.nii
211018-12:47:38,888 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0007_fwhm_id_4/con_0001.nii -> /output/datasink/2ndLevel/spm_con_0007_fwhm4/con_0001.nii
211018-12:47:38,891 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0007_fwhm_id_4/spmT_0001_thr.nii -> /output/datasink/2ndLevel/spm_con_0007_fwhm4/spmT_0001_thr.nii
211018-12:47:38,892 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0006_fwhm_id_4/con_0001.nii -> /output/datasink/2ndLevel/spm_con_0006_fwhm4/con_0001.nii
211018-12:47:38,890 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0007_fwhm_id_8/spmT_0001.nii -> /output/datasink/2ndLevel/spm_con_0007_fwhm8/spmT_0001.nii
211018-12:47:38,897 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0007_fwhm_id_8/con_0001.nii -> /output/datasink/2ndLevel/spm_con_0007_fwhm8/con_0001.nii
211018-12:47:38,896 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0006_fwhm_id_4/spmT_0001_thr.nii -> /output/datasink/2ndLevel/spm_con_0006_fwhm4/spmT_0001_thr.nii
211018-12:47:38,900 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0007_fwhm_id_8/spmT_0001_thr.nii -> /output/datasink/2ndLevel/spm_con_0007_fwhm8/spmT_0001_thr.nii
211018-12:47:38,884 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0006_fwhm_id_8/spmT_0001.nii -> /output/datasink/2ndLevel/spm_con_0006_fwhm8/spmT_0001.nii
211018-12:47:38,904 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.datasink".
211018-12:47:38,905 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.datasink".
211018-12:47:38,908 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0006_fwhm_id_8/con_0001.nii -> /output/datasink/2ndLevel/spm_con_0006_fwhm8/con_0001.nii
211018-12:47:38,912 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0006_fwhm_id_8/spmT_0001_thr.nii -> /output/datasink/2ndLevel/spm_con_0006_fwhm8/spmT_0001_thr.nii
211018-12:47:38,913 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.datasink".
211018-12:47:38,920 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.datasink".
211018-12:47:40,728 nipype.workflow INFO:
[Job 19] Completed (spm_l2analysis.datasink).
211018-12:47:40,731 nipype.workflow INFO:
[Job 24] Completed (spm_l2analysis.datasink).
211018-12:47:40,734 nipype.workflow INFO:
[Job 29] Completed (spm_l2analysis.datasink).
211018-12:47:40,736 nipype.workflow INFO:
[Job 34] Completed (spm_l2analysis.datasink).
211018-12:47:40,740 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 10 jobs ready. Free memory (GB): 5.23/5.23, Free processors: 4/4.
211018-12:47:40,809 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.onesampttestdes" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0005_fwhm_id_8/onesampttestdes".
211018-12:47:40,810 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.onesampttestdes" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0005_fwhm_id_4/onesampttestdes".
211018-12:47:40,812 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.onesampttestdes" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0004_fwhm_id_8/onesampttestdes".
211018-12:47:40,815 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.onesampttestdes" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0004_fwhm_id_4/onesampttestdes".
211018-12:47:40,837 nipype.workflow INFO:
[Node] Running "onesampttestdes" ("nipype.interfaces.spm.model.OneSampleTTestDesign")
211018-12:47:40,844 nipype.workflow INFO:
[Node] Running "onesampttestdes" ("nipype.interfaces.spm.model.OneSampleTTestDesign")
211018-12:47:40,849 nipype.workflow INFO:
[Node] Running "onesampttestdes" ("nipype.interfaces.spm.model.OneSampleTTestDesign")
211018-12:47:40,851 nipype.workflow INFO:
[Node] Running "onesampttestdes" ("nipype.interfaces.spm.model.OneSampleTTestDesign")
211018-12:47:42,730 nipype.workflow INFO:
[MultiProc] Running 4 tasks, and 6 jobs ready. Free memory (GB): 4.43/5.23, Free processors: 0/4.
Currently running:
* spm_l2analysis.onesampttestdes
* spm_l2analysis.onesampttestdes
* spm_l2analysis.onesampttestdes
* spm_l2analysis.onesampttestdes
211018-12:47:48,927 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.onesampttestdes".
211018-12:47:48,928 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.onesampttestdes".
211018-12:47:48,998 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.onesampttestdes".
211018-12:47:49,18 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.onesampttestdes".
211018-12:47:50,742 nipype.workflow INFO:
[Job 35] Completed (spm_l2analysis.onesampttestdes).
211018-12:47:50,745 nipype.workflow INFO:
[Job 40] Completed (spm_l2analysis.onesampttestdes).
211018-12:47:50,748 nipype.workflow INFO:
[Job 45] Completed (spm_l2analysis.onesampttestdes).
211018-12:47:50,751 nipype.workflow INFO:
[Job 50] Completed (spm_l2analysis.onesampttestdes).
211018-12:47:50,756 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 10 jobs ready. Free memory (GB): 5.23/5.23, Free processors: 4/4.
211018-12:47:50,851 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2estimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0005_fwhm_id_8/level2estimate".
211018-12:47:50,854 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2estimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0004_fwhm_id_8/level2estimate".
211018-12:47:50,853 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2estimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0005_fwhm_id_4/level2estimate".
211018-12:47:50,855 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2estimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0004_fwhm_id_4/level2estimate".
211018-12:47:50,865 nipype.workflow INFO:
[Node] Running "level2estimate" ("nipype.interfaces.spm.model.EstimateModel")
211018-12:47:50,865 nipype.workflow INFO:
[Node] Running "level2estimate" ("nipype.interfaces.spm.model.EstimateModel")
211018-12:47:50,872 nipype.workflow INFO:
[Node] Running "level2estimate" ("nipype.interfaces.spm.model.EstimateModel")
211018-12:47:50,875 nipype.workflow INFO:
[Node] Running "level2estimate" ("nipype.interfaces.spm.model.EstimateModel")
211018-12:47:52,745 nipype.workflow INFO:
[MultiProc] Running 4 tasks, and 6 jobs ready. Free memory (GB): 4.43/5.23, Free processors: 0/4.
Currently running:
* spm_l2analysis.level2estimate
* spm_l2analysis.level2estimate
* spm_l2analysis.level2estimate
* spm_l2analysis.level2estimate
211018-12:48:19,816 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2estimate".
211018-12:48:20,172 nipype.workflow INFO:
[Job 51] Completed (spm_l2analysis.level2estimate).
211018-12:48:20,183 nipype.workflow INFO:
[MultiProc] Running 3 tasks, and 7 jobs ready. Free memory (GB): 4.63/5.23, Free processors: 1/4.
Currently running:
* spm_l2analysis.level2estimate
* spm_l2analysis.level2estimate
* spm_l2analysis.level2estimate
211018-12:48:20,288 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2conestimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0004_fwhm_id_4/level2conestimate".
211018-12:48:20,306 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2estimate".
211018-12:48:20,320 nipype.workflow INFO:
[Node] Running "level2conestimate" ("nipype.interfaces.spm.model.EstimateContrast")
211018-12:48:20,378 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2estimate".
211018-12:48:20,381 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2estimate".
211018-12:48:22,173 nipype.workflow INFO:
[Job 36] Completed (spm_l2analysis.level2estimate).
211018-12:48:22,175 nipype.workflow INFO:
[Job 41] Completed (spm_l2analysis.level2estimate).
211018-12:48:22,177 nipype.workflow INFO:
[Job 46] Completed (spm_l2analysis.level2estimate).
211018-12:48:22,180 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 9 jobs ready. Free memory (GB): 5.03/5.23, Free processors: 3/4.
Currently running:
* spm_l2analysis.level2conestimate
211018-12:48:22,243 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2conestimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0005_fwhm_id_8/level2conestimate".
211018-12:48:22,246 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2conestimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0005_fwhm_id_4/level2conestimate".
211018-12:48:22,248 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2conestimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0004_fwhm_id_8/level2conestimate".
211018-12:48:22,266 nipype.workflow INFO:
[Node] Running "level2conestimate" ("nipype.interfaces.spm.model.EstimateContrast")
211018-12:48:22,267 nipype.workflow INFO:
[Node] Running "level2conestimate" ("nipype.interfaces.spm.model.EstimateContrast")
211018-12:48:22,270 nipype.workflow INFO:
[Node] Running "level2conestimate" ("nipype.interfaces.spm.model.EstimateContrast")
211018-12:48:24,177 nipype.workflow INFO:
[MultiProc] Running 4 tasks, and 6 jobs ready. Free memory (GB): 4.43/5.23, Free processors: 0/4.
Currently running:
* spm_l2analysis.level2conestimate
* spm_l2analysis.level2conestimate
* spm_l2analysis.level2conestimate
* spm_l2analysis.level2conestimate
211018-12:48:33,767 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2conestimate".
211018-12:48:34,191 nipype.workflow INFO:
[Job 52] Completed (spm_l2analysis.level2conestimate).
211018-12:48:34,197 nipype.workflow INFO:
[MultiProc] Running 3 tasks, and 7 jobs ready. Free memory (GB): 4.63/5.23, Free processors: 1/4.
Currently running:
* spm_l2analysis.level2conestimate
* spm_l2analysis.level2conestimate
* spm_l2analysis.level2conestimate
211018-12:48:34,343 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2thresh" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0004_fwhm_id_4/level2thresh".
211018-12:48:34,374 nipype.workflow INFO:
[Node] Running "level2thresh" ("nipype.interfaces.spm.model.Threshold")
211018-12:48:35,733 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2conestimate".
211018-12:48:36,88 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2conestimate".
211018-12:48:36,102 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2conestimate".
211018-12:48:36,191 nipype.workflow INFO:
[Job 37] Completed (spm_l2analysis.level2conestimate).
211018-12:48:36,194 nipype.workflow INFO:
[Job 42] Completed (spm_l2analysis.level2conestimate).
211018-12:48:36,197 nipype.workflow INFO:
[Job 47] Completed (spm_l2analysis.level2conestimate).
211018-12:48:36,202 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 9 jobs ready. Free memory (GB): 5.03/5.23, Free processors: 3/4.
Currently running:
* spm_l2analysis.level2thresh
211018-12:48:36,293 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2thresh" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0005_fwhm_id_8/level2thresh".
211018-12:48:36,299 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2thresh" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0005_fwhm_id_4/level2thresh".
211018-12:48:36,299 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2thresh" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0004_fwhm_id_8/level2thresh".
211018-12:48:36,320 nipype.workflow INFO:
[Node] Running "level2thresh" ("nipype.interfaces.spm.model.Threshold")
211018-12:48:36,344 nipype.workflow INFO:
[Node] Running "level2thresh" ("nipype.interfaces.spm.model.Threshold")
211018-12:48:36,329 nipype.workflow INFO:
[Node] Running "level2thresh" ("nipype.interfaces.spm.model.Threshold")
211018-12:48:38,196 nipype.workflow INFO:
[MultiProc] Running 4 tasks, and 6 jobs ready. Free memory (GB): 4.43/5.23, Free processors: 0/4.
Currently running:
* spm_l2analysis.level2thresh
* spm_l2analysis.level2thresh
* spm_l2analysis.level2thresh
* spm_l2analysis.level2thresh
211018-12:48:40,616 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2thresh".
211018-12:48:41,660 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2thresh".
211018-12:48:41,920 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2thresh".
211018-12:48:41,999 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2thresh".
211018-12:48:42,200 nipype.workflow INFO:
[Job 53] Completed (spm_l2analysis.level2thresh).
211018-12:48:42,204 nipype.workflow INFO:
[Job 38] Completed (spm_l2analysis.level2thresh).
211018-12:48:42,206 nipype.workflow INFO:
[Job 43] Completed (spm_l2analysis.level2thresh).
211018-12:48:42,209 nipype.workflow INFO:
[Job 48] Completed (spm_l2analysis.level2thresh).
211018-12:48:42,214 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 10 jobs ready. Free memory (GB): 5.23/5.23, Free processors: 4/4.
211018-12:48:42,282 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.datasink" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0005_fwhm_id_8/datasink".
211018-12:48:42,289 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.datasink" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0005_fwhm_id_4/datasink".
211018-12:48:42,293 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.datasink" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0004_fwhm_id_8/datasink".
211018-12:48:42,299 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.datasink" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0004_fwhm_id_4/datasink".
211018-12:48:42,326 nipype.workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
211018-12:48:42,327 nipype.workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
211018-12:48:42,332 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0004_fwhm_id_4/SPM.mat -> /output/datasink/2ndLevel/spm_con_0004_fwhm4/SPM.mat
211018-12:48:42,332 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0004_fwhm_id_8/SPM.mat -> /output/datasink/2ndLevel/spm_con_0004_fwhm8/SPM.mat
211018-12:48:42,333 nipype.workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
211018-12:48:42,334 nipype.workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
211018-12:48:42,336 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0004_fwhm_id_8/spmT_0001.nii -> /output/datasink/2ndLevel/spm_con_0004_fwhm8/spmT_0001.nii
211018-12:48:42,336 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0004_fwhm_id_4/spmT_0001.nii -> /output/datasink/2ndLevel/spm_con_0004_fwhm4/spmT_0001.nii
211018-12:48:42,340 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0005_fwhm_id_8/SPM.mat -> /output/datasink/2ndLevel/spm_con_0005_fwhm8/SPM.mat
211018-12:48:42,340 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0004_fwhm_id_8/con_0001.nii -> /output/datasink/2ndLevel/spm_con_0004_fwhm8/con_0001.nii
211018-12:48:42,343 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0004_fwhm_id_4/con_0001.nii -> /output/datasink/2ndLevel/spm_con_0004_fwhm4/con_0001.nii
211018-12:48:42,343 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0005_fwhm_id_4/SPM.mat -> /output/datasink/2ndLevel/spm_con_0005_fwhm4/SPM.mat
211018-12:48:42,345 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0005_fwhm_id_8/spmT_0001.nii -> /output/datasink/2ndLevel/spm_con_0005_fwhm8/spmT_0001.nii
211018-12:48:42,345 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0004_fwhm_id_4/spmT_0001_thr.nii -> /output/datasink/2ndLevel/spm_con_0004_fwhm4/spmT_0001_thr.nii
211018-12:48:42,347 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0004_fwhm_id_8/spmT_0001_thr.nii -> /output/datasink/2ndLevel/spm_con_0004_fwhm8/spmT_0001_thr.nii
211018-12:48:42,348 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0005_fwhm_id_8/con_0001.nii -> /output/datasink/2ndLevel/spm_con_0005_fwhm8/con_0001.nii
211018-12:48:42,353 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.datasink".
211018-12:48:42,350 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0005_fwhm_id_4/spmT_0001.nii -> /output/datasink/2ndLevel/spm_con_0005_fwhm4/spmT_0001.nii
211018-12:48:42,359 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.datasink".
211018-12:48:42,358 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0005_fwhm_id_4/con_0001.nii -> /output/datasink/2ndLevel/spm_con_0005_fwhm4/con_0001.nii
211018-12:48:42,361 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0005_fwhm_id_8/spmT_0001_thr.nii -> /output/datasink/2ndLevel/spm_con_0005_fwhm8/spmT_0001_thr.nii
211018-12:48:42,364 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0005_fwhm_id_4/spmT_0001_thr.nii -> /output/datasink/2ndLevel/spm_con_0005_fwhm4/spmT_0001_thr.nii
211018-12:48:42,375 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.datasink".
211018-12:48:42,379 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.datasink".
211018-12:48:44,203 nipype.workflow INFO:
[Job 39] Completed (spm_l2analysis.datasink).
211018-12:48:44,204 nipype.workflow INFO:
[Job 44] Completed (spm_l2analysis.datasink).
211018-12:48:44,206 nipype.workflow INFO:
[Job 49] Completed (spm_l2analysis.datasink).
211018-12:48:44,209 nipype.workflow INFO:
[Job 54] Completed (spm_l2analysis.datasink).
211018-12:48:44,212 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 6 jobs ready. Free memory (GB): 5.23/5.23, Free processors: 4/4.
211018-12:48:44,294 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.onesampttestdes" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0003_fwhm_id_8/onesampttestdes".
211018-12:48:44,297 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.onesampttestdes" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0003_fwhm_id_4/onesampttestdes".
211018-12:48:44,300 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.onesampttestdes" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0002_fwhm_id_8/onesampttestdes".
211018-12:48:44,302 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.onesampttestdes" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0002_fwhm_id_4/onesampttestdes".
211018-12:48:44,321 nipype.workflow INFO:
[Node] Running "onesampttestdes" ("nipype.interfaces.spm.model.OneSampleTTestDesign")
211018-12:48:44,322 nipype.workflow INFO:
[Node] Running "onesampttestdes" ("nipype.interfaces.spm.model.OneSampleTTestDesign")
211018-12:48:44,327 nipype.workflow INFO:
[Node] Running "onesampttestdes" ("nipype.interfaces.spm.model.OneSampleTTestDesign")
211018-12:48:44,331 nipype.workflow INFO:
[Node] Running "onesampttestdes" ("nipype.interfaces.spm.model.OneSampleTTestDesign")
211018-12:48:46,205 nipype.workflow INFO:
[MultiProc] Running 4 tasks, and 2 jobs ready. Free memory (GB): 4.43/5.23, Free processors: 0/4.
Currently running:
* spm_l2analysis.onesampttestdes
* spm_l2analysis.onesampttestdes
* spm_l2analysis.onesampttestdes
* spm_l2analysis.onesampttestdes
211018-12:48:51,777 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.onesampttestdes".
211018-12:48:51,842 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.onesampttestdes".
211018-12:48:51,851 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.onesampttestdes".
211018-12:48:51,932 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.onesampttestdes".
211018-12:48:52,219 nipype.workflow INFO:
[Job 55] Completed (spm_l2analysis.onesampttestdes).
211018-12:48:52,222 nipype.workflow INFO:
[Job 60] Completed (spm_l2analysis.onesampttestdes).
211018-12:48:52,224 nipype.workflow INFO:
[Job 65] Completed (spm_l2analysis.onesampttestdes).
211018-12:48:52,228 nipype.workflow INFO:
[Job 70] Completed (spm_l2analysis.onesampttestdes).
211018-12:48:52,231 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 6 jobs ready. Free memory (GB): 5.23/5.23, Free processors: 4/4.
211018-12:48:52,300 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2estimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0003_fwhm_id_4/level2estimate".
211018-12:48:52,300 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2estimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0003_fwhm_id_8/level2estimate".
211018-12:48:52,301 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2estimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0002_fwhm_id_8/level2estimate".
211018-12:48:52,301 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2estimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0002_fwhm_id_4/level2estimate".
211018-12:48:52,312 nipype.workflow INFO:
[Node] Running "level2estimate" ("nipype.interfaces.spm.model.EstimateModel")
211018-12:48:52,313 nipype.workflow INFO:
[Node] Running "level2estimate" ("nipype.interfaces.spm.model.EstimateModel")
211018-12:48:52,313 nipype.workflow INFO:
[Node] Running "level2estimate" ("nipype.interfaces.spm.model.EstimateModel")
211018-12:48:52,320 nipype.workflow INFO:
[Node] Running "level2estimate" ("nipype.interfaces.spm.model.EstimateModel")
211018-12:48:54,222 nipype.workflow INFO:
[MultiProc] Running 4 tasks, and 2 jobs ready. Free memory (GB): 4.43/5.23, Free processors: 0/4.
Currently running:
* spm_l2analysis.level2estimate
* spm_l2analysis.level2estimate
* spm_l2analysis.level2estimate
* spm_l2analysis.level2estimate
211018-12:49:19,424 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2estimate".
211018-12:49:19,418 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2estimate".
211018-12:49:19,418 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2estimate".
211018-12:49:19,432 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2estimate".
211018-12:49:20,247 nipype.workflow INFO:
[Job 56] Completed (spm_l2analysis.level2estimate).
211018-12:49:20,253 nipype.workflow INFO:
[Job 61] Completed (spm_l2analysis.level2estimate).
211018-12:49:20,256 nipype.workflow INFO:
[Job 66] Completed (spm_l2analysis.level2estimate).
211018-12:49:20,259 nipype.workflow INFO:
[Job 71] Completed (spm_l2analysis.level2estimate).
211018-12:49:20,264 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 6 jobs ready. Free memory (GB): 5.23/5.23, Free processors: 4/4.
211018-12:49:20,339 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2conestimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0003_fwhm_id_8/level2conestimate".
211018-12:49:20,345 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2conestimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0003_fwhm_id_4/level2conestimate".
211018-12:49:20,347 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2conestimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0002_fwhm_id_4/level2conestimate".
211018-12:49:20,348 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2conestimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0002_fwhm_id_8/level2conestimate".
211018-12:49:20,451 nipype.workflow INFO:
[Node] Running "level2conestimate" ("nipype.interfaces.spm.model.EstimateContrast")
211018-12:49:20,453 nipype.workflow INFO:
[Node] Running "level2conestimate" ("nipype.interfaces.spm.model.EstimateContrast")
211018-12:49:20,451 nipype.workflow INFO:
[Node] Running "level2conestimate" ("nipype.interfaces.spm.model.EstimateContrast")
211018-12:49:20,463 nipype.workflow INFO:
[Node] Running "level2conestimate" ("nipype.interfaces.spm.model.EstimateContrast")
211018-12:49:22,249 nipype.workflow INFO:
[MultiProc] Running 4 tasks, and 2 jobs ready. Free memory (GB): 4.43/5.23, Free processors: 0/4.
Currently running:
* spm_l2analysis.level2conestimate
* spm_l2analysis.level2conestimate
* spm_l2analysis.level2conestimate
* spm_l2analysis.level2conestimate
211018-12:49:33,880 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2conestimate".
211018-12:49:33,881 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2conestimate".
211018-12:49:33,895 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2conestimate".
211018-12:49:34,76 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2conestimate".
211018-12:49:34,261 nipype.workflow INFO:
[Job 57] Completed (spm_l2analysis.level2conestimate).
211018-12:49:34,267 nipype.workflow INFO:
[Job 62] Completed (spm_l2analysis.level2conestimate).
211018-12:49:34,270 nipype.workflow INFO:
[Job 67] Completed (spm_l2analysis.level2conestimate).
211018-12:49:34,276 nipype.workflow INFO:
[Job 72] Completed (spm_l2analysis.level2conestimate).
211018-12:49:34,281 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 6 jobs ready. Free memory (GB): 5.23/5.23, Free processors: 4/4.
211018-12:49:34,382 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2thresh" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0003_fwhm_id_8/level2thresh".
211018-12:49:34,386 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2thresh" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0003_fwhm_id_4/level2thresh".
211018-12:49:34,388 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2thresh" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0002_fwhm_id_8/level2thresh".
211018-12:49:34,402 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2thresh" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0002_fwhm_id_4/level2thresh".
211018-12:49:34,412 nipype.workflow INFO:
[Node] Running "level2thresh" ("nipype.interfaces.spm.model.Threshold")
211018-12:49:34,414 nipype.workflow INFO:
[Node] Running "level2thresh" ("nipype.interfaces.spm.model.Threshold")
211018-12:49:34,418 nipype.workflow INFO:
[Node] Running "level2thresh" ("nipype.interfaces.spm.model.Threshold")
211018-12:49:34,457 nipype.workflow INFO:
[Node] Running "level2thresh" ("nipype.interfaces.spm.model.Threshold")
211018-12:49:36,264 nipype.workflow INFO:
[MultiProc] Running 4 tasks, and 2 jobs ready. Free memory (GB): 4.43/5.23, Free processors: 0/4.
Currently running:
* spm_l2analysis.level2thresh
* spm_l2analysis.level2thresh
* spm_l2analysis.level2thresh
* spm_l2analysis.level2thresh
211018-12:49:40,536 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2thresh".
211018-12:49:40,536 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2thresh".
211018-12:49:40,565 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2thresh".
211018-12:49:40,603 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2thresh".
211018-12:49:42,274 nipype.workflow INFO:
[Job 58] Completed (spm_l2analysis.level2thresh).
211018-12:49:42,277 nipype.workflow INFO:
[Job 63] Completed (spm_l2analysis.level2thresh).
211018-12:49:42,279 nipype.workflow INFO:
[Job 68] Completed (spm_l2analysis.level2thresh).
211018-12:49:42,282 nipype.workflow INFO:
[Job 73] Completed (spm_l2analysis.level2thresh).
211018-12:49:42,286 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 6 jobs ready. Free memory (GB): 5.23/5.23, Free processors: 4/4.
211018-12:49:42,395 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.datasink" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0003_fwhm_id_4/datasink".
211018-12:49:42,396 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.datasink" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0003_fwhm_id_8/datasink".
211018-12:49:42,397 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.datasink" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0002_fwhm_id_4/datasink".
211018-12:49:42,396 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.datasink" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0002_fwhm_id_8/datasink".
211018-12:49:42,438 nipype.workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
211018-12:49:42,439 nipype.workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
211018-12:49:42,438 nipype.workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
211018-12:49:42,438 nipype.workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
211018-12:49:42,443 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0003_fwhm_id_8/SPM.mat -> /output/datasink/2ndLevel/spm_con_0003_fwhm8/SPM.mat
211018-12:49:42,443 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0002_fwhm_id_4/SPM.mat -> /output/datasink/2ndLevel/spm_con_0002_fwhm4/SPM.mat
211018-12:49:42,442 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0003_fwhm_id_4/SPM.mat -> /output/datasink/2ndLevel/spm_con_0003_fwhm4/SPM.mat
211018-12:49:42,448 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0003_fwhm_id_8/spmT_0001.nii -> /output/datasink/2ndLevel/spm_con_0003_fwhm8/spmT_0001.nii
211018-12:49:42,448 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0003_fwhm_id_4/spmT_0001.nii -> /output/datasink/2ndLevel/spm_con_0003_fwhm4/spmT_0001.nii
211018-12:49:42,450 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0003_fwhm_id_4/con_0001.nii -> /output/datasink/2ndLevel/spm_con_0003_fwhm4/con_0001.nii
211018-12:49:42,450 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0003_fwhm_id_8/con_0001.nii -> /output/datasink/2ndLevel/spm_con_0003_fwhm8/con_0001.nii
211018-12:49:42,452 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0003_fwhm_id_4/spmT_0001_thr.nii -> /output/datasink/2ndLevel/spm_con_0003_fwhm4/spmT_0001_thr.nii
211018-12:49:42,452 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0003_fwhm_id_8/spmT_0001_thr.nii -> /output/datasink/2ndLevel/spm_con_0003_fwhm8/spmT_0001_thr.nii
211018-12:49:42,448 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0002_fwhm_id_4/spmT_0001.nii -> /output/datasink/2ndLevel/spm_con_0002_fwhm4/spmT_0001.nii
211018-12:49:42,455 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0002_fwhm_id_8/SPM.mat -> /output/datasink/2ndLevel/spm_con_0002_fwhm8/SPM.mat
211018-12:49:42,458 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0002_fwhm_id_4/con_0001.nii -> /output/datasink/2ndLevel/spm_con_0002_fwhm4/con_0001.nii
211018-12:49:42,461 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.datasink".
211018-12:49:42,462 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.datasink".
211018-12:49:42,464 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0002_fwhm_id_8/spmT_0001.nii -> /output/datasink/2ndLevel/spm_con_0002_fwhm8/spmT_0001.nii
211018-12:49:42,464 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0002_fwhm_id_4/spmT_0001_thr.nii -> /output/datasink/2ndLevel/spm_con_0002_fwhm4/spmT_0001_thr.nii
211018-12:49:42,466 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0002_fwhm_id_8/con_0001.nii -> /output/datasink/2ndLevel/spm_con_0002_fwhm8/con_0001.nii
211018-12:49:42,473 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.datasink".
211018-12:49:42,475 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0002_fwhm_id_8/spmT_0001_thr.nii -> /output/datasink/2ndLevel/spm_con_0002_fwhm8/spmT_0001_thr.nii
211018-12:49:42,483 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.datasink".
211018-12:49:44,279 nipype.workflow INFO:
[Job 59] Completed (spm_l2analysis.datasink).
211018-12:49:44,282 nipype.workflow INFO:
[Job 64] Completed (spm_l2analysis.datasink).
211018-12:49:44,285 nipype.workflow INFO:
[Job 69] Completed (spm_l2analysis.datasink).
211018-12:49:44,287 nipype.workflow INFO:
[Job 74] Completed (spm_l2analysis.datasink).
211018-12:49:44,290 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 5.23/5.23, Free processors: 4/4.
211018-12:49:44,355 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.onesampttestdes" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0001_fwhm_id_8/onesampttestdes".
211018-12:49:44,356 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.onesampttestdes" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0001_fwhm_id_4/onesampttestdes".
211018-12:49:44,382 nipype.workflow INFO:
[Node] Running "onesampttestdes" ("nipype.interfaces.spm.model.OneSampleTTestDesign")
211018-12:49:44,382 nipype.workflow INFO:
[Node] Running "onesampttestdes" ("nipype.interfaces.spm.model.OneSampleTTestDesign")
211018-12:49:46,281 nipype.workflow INFO:
[MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 4.83/5.23, Free processors: 2/4.
Currently running:
* spm_l2analysis.onesampttestdes
* spm_l2analysis.onesampttestdes
211018-12:49:50,542 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.onesampttestdes".
211018-12:49:50,542 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.onesampttestdes".
211018-12:49:52,288 nipype.workflow INFO:
[Job 75] Completed (spm_l2analysis.onesampttestdes).
211018-12:49:52,291 nipype.workflow INFO:
[Job 80] Completed (spm_l2analysis.onesampttestdes).
211018-12:49:52,296 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 5.23/5.23, Free processors: 4/4.
211018-12:49:52,365 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2estimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0001_fwhm_id_4/level2estimate".
211018-12:49:52,365 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2estimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0001_fwhm_id_8/level2estimate".
211018-12:49:52,376 nipype.workflow INFO:
[Node] Running "level2estimate" ("nipype.interfaces.spm.model.EstimateModel")
211018-12:49:52,378 nipype.workflow INFO:
[Node] Running "level2estimate" ("nipype.interfaces.spm.model.EstimateModel")
211018-12:49:54,288 nipype.workflow INFO:
[MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 4.83/5.23, Free processors: 2/4.
Currently running:
* spm_l2analysis.level2estimate
* spm_l2analysis.level2estimate
211018-12:50:08,618 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2estimate".
211018-12:50:08,621 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2estimate".
211018-12:50:10,305 nipype.workflow INFO:
[Job 76] Completed (spm_l2analysis.level2estimate).
211018-12:50:10,309 nipype.workflow INFO:
[Job 81] Completed (spm_l2analysis.level2estimate).
211018-12:50:10,313 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 5.23/5.23, Free processors: 4/4.
211018-12:50:10,386 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2conestimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0001_fwhm_id_4/level2conestimate".
211018-12:50:10,385 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2conestimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0001_fwhm_id_8/level2conestimate".
211018-12:50:10,406 nipype.workflow INFO:
[Node] Running "level2conestimate" ("nipype.interfaces.spm.model.EstimateContrast")
211018-12:50:10,406 nipype.workflow INFO:
[Node] Running "level2conestimate" ("nipype.interfaces.spm.model.EstimateContrast")
211018-12:50:12,307 nipype.workflow INFO:
[MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 4.83/5.23, Free processors: 2/4.
Currently running:
* spm_l2analysis.level2conestimate
* spm_l2analysis.level2conestimate
211018-12:50:19,39 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2conestimate".
211018-12:50:19,39 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2conestimate".
211018-12:50:20,317 nipype.workflow INFO:
[Job 77] Completed (spm_l2analysis.level2conestimate).
211018-12:50:20,321 nipype.workflow INFO:
[Job 82] Completed (spm_l2analysis.level2conestimate).
211018-12:50:20,326 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 5.23/5.23, Free processors: 4/4.
211018-12:50:20,397 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2thresh" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0001_fwhm_id_8/level2thresh".
211018-12:50:20,397 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2thresh" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0001_fwhm_id_4/level2thresh".
211018-12:50:20,422 nipype.workflow INFO:
[Node] Running "level2thresh" ("nipype.interfaces.spm.model.Threshold")
211018-12:50:20,425 nipype.workflow INFO:
[Node] Running "level2thresh" ("nipype.interfaces.spm.model.Threshold")
211018-12:50:22,319 nipype.workflow INFO:
[MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 4.83/5.23, Free processors: 2/4.
Currently running:
* spm_l2analysis.level2thresh
* spm_l2analysis.level2thresh
211018-12:50:24,356 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2thresh".
211018-12:50:24,358 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2thresh".
211018-12:50:26,324 nipype.workflow INFO:
[Job 78] Completed (spm_l2analysis.level2thresh).
211018-12:50:26,330 nipype.workflow INFO:
[Job 83] Completed (spm_l2analysis.level2thresh).
211018-12:50:26,336 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 5.23/5.23, Free processors: 4/4.
211018-12:50:26,569 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.datasink" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0001_fwhm_id_8/datasink".
211018-12:50:26,572 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.datasink" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0001_fwhm_id_4/datasink".
211018-12:50:26,715 nipype.workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
211018-12:50:26,715 nipype.workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
211018-12:50:26,719 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0001_fwhm_id_8/SPM.mat -> /output/datasink/2ndLevel/spm_con_0001_fwhm8/SPM.mat
211018-12:50:26,722 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0001_fwhm_id_8/spmT_0001.nii -> /output/datasink/2ndLevel/spm_con_0001_fwhm8/spmT_0001.nii
211018-12:50:26,722 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0001_fwhm_id_4/SPM.mat -> /output/datasink/2ndLevel/spm_con_0001_fwhm4/SPM.mat
211018-12:50:26,724 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0001_fwhm_id_8/con_0001.nii -> /output/datasink/2ndLevel/spm_con_0001_fwhm8/con_0001.nii
211018-12:50:26,725 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0001_fwhm_id_4/spmT_0001.nii -> /output/datasink/2ndLevel/spm_con_0001_fwhm4/spmT_0001.nii
211018-12:50:26,727 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0001_fwhm_id_8/spmT_0001_thr.nii -> /output/datasink/2ndLevel/spm_con_0001_fwhm8/spmT_0001_thr.nii
211018-12:50:26,731 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0001_fwhm_id_4/con_0001.nii -> /output/datasink/2ndLevel/spm_con_0001_fwhm4/con_0001.nii
211018-12:50:26,737 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0001_fwhm_id_4/spmT_0001_thr.nii -> /output/datasink/2ndLevel/spm_con_0001_fwhm4/spmT_0001_thr.nii
211018-12:50:26,758 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.datasink".
211018-12:50:26,778 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.datasink".
211018-12:50:28,329 nipype.workflow INFO:
[Job 79] Completed (spm_l2analysis.datasink).
211018-12:50:28,332 nipype.workflow INFO:
[Job 84] Completed (spm_l2analysis.datasink).
211018-12:50:28,336 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 0 jobs ready. Free memory (GB): 5.23/5.23, Free processors: 4/4.
<networkx.classes.digraph.DiGraph at 0x7f004ab4ba90>
Group Analysis with ANTs¶
Now to run the same group analysis, but on the ANTs normalized images, we just need to change a few parameters:
# Change the SelectFiles template and recreate the node
templates = {'cons': opj(output_dir, 'norm_ants', 'sub-*_fwhm{fwhm_id}',
'{contrast_id}_trans.nii')}
selectfiles = Node(SelectFiles(templates,
base_directory=experiment_dir,
sort_filelist=True),
name="selectfiles")
# Change the substituion parameters for the datasink
substitutions = [('_contrast_id_', '')]
subjFolders = [('%s_fwhm_id_%s' % (con, f), 'ants_%s_fwhm%s' % (con, f))
for f in fwhm
for con in contrast_list]
substitutions.extend(subjFolders)
datasink.inputs.substitutions = substitutions
Now, we just have to recreate the workflow.
# Initiation of the 2nd-level analysis workflow
l2analysis = Workflow(name='ants_l2analysis')
l2analysis.base_dir = opj(experiment_dir, working_dir)
# Connect up the 2nd-level analysis components
l2analysis.connect([(infosource, selectfiles, [('contrast_id', 'contrast_id'),
('fwhm_id', 'fwhm_id')]),
(selectfiles, onesamplettestdes, [('cons', 'in_files')]),
(gunzip, onesamplettestdes, [('out_file',
'explicit_mask_file')]),
(onesamplettestdes, level2estimate, [('spm_mat_file',
'spm_mat_file')]),
(level2estimate, level2conestimate, [('spm_mat_file',
'spm_mat_file'),
('beta_images',
'beta_images'),
('residual_image',
'residual_image')]),
(level2conestimate, level2thresh, [('spm_mat_file',
'spm_mat_file'),
('spmT_images',
'stat_image'),
]),
(level2conestimate, datasink, [('spm_mat_file',
'2ndLevel.@spm_mat'),
('spmT_images',
'2ndLevel.@T'),
('con_images',
'2ndLevel.@con')]),
(level2thresh, datasink, [('thresholded_map',
'2ndLevel.@threshold')]),
])
And we can run it!
l2analysis.run('MultiProc', plugin_args={'n_procs': 4})
211018-12:51:01,558 nipype.workflow INFO:
Workflow ants_l2analysis settings: ['check', 'execution', 'logging', 'monitoring']
211018-12:51:01,660 nipype.workflow INFO:
Running in parallel.
211018-12:51:01,668 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 15 jobs ready. Free memory (GB): 5.23/5.23, Free processors: 4/4.
211018-12:51:01,792 nipype.workflow INFO:
[Node] Setting-up "ants_l2analysis.selectfiles" in "/output/workingdir/ants_l2analysis/_contrast_id_con_0007_fwhm_id_8/selectfiles".
211018-12:51:01,809 nipype.workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
211018-12:51:01,815 nipype.workflow INFO:
[Node] Setting-up "ants_l2analysis.selectfiles" in "/output/workingdir/ants_l2analysis/_contrast_id_con_0007_fwhm_id_4/selectfiles".
211018-12:51:01,816 nipype.workflow INFO:
[Node] Setting-up "ants_l2analysis.selectfiles" in "/output/workingdir/ants_l2analysis/_contrast_id_con_0006_fwhm_id_4/selectfiles".
211018-12:51:01,815 nipype.workflow INFO:
[Node] Setting-up "ants_l2analysis.selectfiles" in "/output/workingdir/ants_l2analysis/_contrast_id_con_0006_fwhm_id_8/selectfiles".
211018-12:51:01,827 nipype.workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
211018-12:51:01,830 nipype.workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
211018-12:51:01,834 nipype.workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
211018-12:51:01,855 nipype.workflow INFO:
[Node] Finished "ants_l2analysis.selectfiles".
211018-12:51:01,861 nipype.workflow INFO:
[Node] Finished "ants_l2analysis.selectfiles".
211018-12:51:01,864 nipype.workflow INFO:
[Node] Finished "ants_l2analysis.selectfiles".
211018-12:51:01,864 nipype.workflow INFO:
[Node] Finished "ants_l2analysis.selectfiles".
211018-12:51:03,680 nipype.workflow INFO:
[Job 0] Completed (ants_l2analysis.selectfiles).
211018-12:51:03,684 nipype.workflow INFO:
[Job 1] Completed (ants_l2analysis.selectfiles).
211018-12:51:03,687 nipype.workflow INFO:
[Job 2] Completed (ants_l2analysis.selectfiles).
211018-12:51:03,689 nipype.workflow INFO:
[Job 3] Completed (ants_l2analysis.selectfiles).
211018-12:51:03,693 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 11 jobs ready. Free memory (GB): 5.23/5.23, Free processors: 4/4.
211018-12:51:03,819 nipype.workflow INFO:
[Node] Setting-up "ants_l2analysis.selectfiles" in "/output/workingdir/ants_l2analysis/_contrast_id_con_0005_fwhm_id_4/selectfiles".
211018-12:51:03,819 nipype.workflow INFO:
[Node] Setting-up "ants_l2analysis.selectfiles" in "/output/workingdir/ants_l2analysis/_contrast_id_con_0005_fwhm_id_8/selectfiles".
211018-12:51:03,819 nipype.workflow INFO:
[Node] Setting-up "ants_l2analysis.selectfiles" in "/output/workingdir/ants_l2analysis/_contrast_id_con_0004_fwhm_id_8/selectfiles".
211018-12:51:03,820 nipype.workflow INFO:
[Node] Setting-up "ants_l2analysis.selectfiles" in "/output/workingdir/ants_l2analysis/_contrast_id_con_0004_fwhm_id_4/selectfiles".
211018-12:51:03,826 nipype.workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
211018-12:51:03,826 nipype.workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
211018-12:51:03,827 nipype.workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
211018-12:51:03,834 nipype.workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
211018-12:51:03,841 nipype.workflow INFO:
[Node] Finished "ants_l2analysis.selectfiles".
211018-12:51:03,844 nipype.workflow INFO:
[Node] Finished "ants_l2analysis.selectfiles".
211018-12:51:03,841 nipype.workflow INFO:
[Node] Finished "ants_l2analysis.selectfiles".
211018-12:51:03,846 nipype.workflow INFO:
[Node] Finished "ants_l2analysis.selectfiles".
211018-12:51:05,679 nipype.workflow INFO:
[Job 4] Completed (ants_l2analysis.selectfiles).
211018-12:51:05,683 nipype.workflow INFO:
[Job 5] Completed (ants_l2analysis.selectfiles).
211018-12:51:05,685 nipype.workflow INFO:
[Job 6] Completed (ants_l2analysis.selectfiles).
211018-12:51:05,687 nipype.workflow INFO:
[Job 7] Completed (ants_l2analysis.selectfiles).
211018-12:51:05,692 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 7 jobs ready. Free memory (GB): 5.23/5.23, Free processors: 4/4.
211018-12:51:05,766 nipype.workflow INFO:
[Node] Setting-up "ants_l2analysis.selectfiles" in "/output/workingdir/ants_l2analysis/_contrast_id_con_0003_fwhm_id_8/selectfiles".
211018-12:51:05,767 nipype.workflow INFO:
[Node] Setting-up "ants_l2analysis.selectfiles" in "/output/workingdir/ants_l2analysis/_contrast_id_con_0003_fwhm_id_4/selectfiles".
211018-12:51:05,770 nipype.workflow INFO:
[Node] Setting-up "ants_l2analysis.selectfiles" in "/output/workingdir/ants_l2analysis/_contrast_id_con_0002_fwhm_id_8/selectfiles".
211018-12:51:05,771 nipype.workflow INFO:
[Node] Setting-up "ants_l2analysis.selectfiles" in "/output/workingdir/ants_l2analysis/_contrast_id_con_0002_fwhm_id_4/selectfiles".
211018-12:51:05,773 nipype.workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
211018-12:51:05,777 nipype.workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
211018-12:51:05,773 nipype.workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
211018-12:51:05,783 nipype.workflow INFO:
[Node] Finished "ants_l2analysis.selectfiles".
211018-12:51:05,779 nipype.workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
211018-12:51:05,785 nipype.workflow INFO:
[Node] Finished "ants_l2analysis.selectfiles".
211018-12:51:05,792 nipype.workflow INFO:
[Node] Finished "ants_l2analysis.selectfiles".
211018-12:51:05,797 nipype.workflow INFO:
[Node] Finished "ants_l2analysis.selectfiles".
211018-12:51:07,683 nipype.workflow INFO:
[Job 8] Completed (ants_l2analysis.selectfiles).
211018-12:51:07,685 nipype.workflow INFO:
[Job 9] Completed (ants_l2analysis.selectfiles).
211018-12:51:07,688 nipype.workflow INFO:
[Job 10] Completed (ants_l2analysis.selectfiles).
211018-12:51:07,690 nipype.workflow INFO:
[Job 11] Completed (ants_l2analysis.selectfiles).
211018-12:51:07,694 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 3 jobs ready. Free memory (GB): 5.23/5.23, Free processors: 4/4.
211018-12:51:07,767 nipype.workflow INFO:
[Job 14] Cached (spm_l2analysis.gunzip).
211018-12:51:07,767 nipype.workflow INFO:
[Node] Setting-up "ants_l2analysis.selectfiles" in "/output/workingdir/ants_l2analysis/_contrast_id_con_0001_fwhm_id_8/selectfiles".
211018-12:51:07,767 nipype.workflow INFO:
[Node] Setting-up "ants_l2analysis.selectfiles" in "/output/workingdir/ants_l2analysis/_contrast_id_con_0001_fwhm_id_4/selectfiles".
211018-12:51:07,773 nipype.workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
211018-12:51:07,774 nipype.workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
211018-12:51:07,782 nipype.workflow INFO:
[Node] Finished "ants_l2analysis.selectfiles".
211018-12:51:07,783 nipype.workflow INFO:
[Node] Finished "ants_l2analysis.selectfiles".
211018-12:51:09,687 nipype.workflow INFO:
[Job 12] Completed (ants_l2analysis.selectfiles).
211018-12:51:09,690 nipype.workflow INFO:
[Job 13] Completed (ants_l2analysis.selectfiles).
211018-12:51:09,694 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 14 jobs ready. Free memory (GB): 5.23/5.23, Free processors: 4/4.
211018-12:51:09,773 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.onesampttestdes".
211018-12:51:09,781 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.onesampttestdes" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0007_fwhm_id_8/onesampttestdes".
211018-12:51:09,784 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.onesampttestdes".
211018-12:51:09,788 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.onesampttestdes".
211018-12:51:09,792 nipype.workflow INFO:
[Node] Running "onesampttestdes" ("nipype.interfaces.spm.model.OneSampleTTestDesign")
211018-12:51:09,796 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.onesampttestdes" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0007_fwhm_id_4/onesampttestdes".
211018-12:51:09,800 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.onesampttestdes".
211018-12:51:09,804 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.onesampttestdes".
211018-12:51:09,809 nipype.workflow INFO:
[Node] Running "onesampttestdes" ("nipype.interfaces.spm.model.OneSampleTTestDesign")
211018-12:51:09,812 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.onesampttestdes" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0006_fwhm_id_8/onesampttestdes".
211018-12:51:09,815 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.onesampttestdes".
211018-12:51:09,825 nipype.workflow INFO:
[Node] Running "onesampttestdes" ("nipype.interfaces.spm.model.OneSampleTTestDesign")
211018-12:51:09,834 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.onesampttestdes".
211018-12:51:09,843 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.onesampttestdes" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0006_fwhm_id_4/onesampttestdes".
211018-12:51:09,850 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.onesampttestdes".
211018-12:51:09,858 nipype.workflow INFO:
[Node] Running "onesampttestdes" ("nipype.interfaces.spm.model.OneSampleTTestDesign")
211018-12:51:11,687 nipype.workflow INFO:
[MultiProc] Running 4 tasks, and 10 jobs ready. Free memory (GB): 4.43/5.23, Free processors: 0/4.
Currently running:
* spm_l2analysis.onesampttestdes
* spm_l2analysis.onesampttestdes
* spm_l2analysis.onesampttestdes
* spm_l2analysis.onesampttestdes
211018-12:51:18,622 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.onesampttestdes".
211018-12:51:18,637 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.onesampttestdes".
211018-12:51:18,702 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.onesampttestdes".
211018-12:51:18,721 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.onesampttestdes".
211018-12:51:19,695 nipype.workflow INFO:
[Job 15] Completed (spm_l2analysis.onesampttestdes).
211018-12:51:19,698 nipype.workflow INFO:
[Job 20] Completed (spm_l2analysis.onesampttestdes).
211018-12:51:19,703 nipype.workflow INFO:
[Job 25] Completed (spm_l2analysis.onesampttestdes).
211018-12:51:19,707 nipype.workflow INFO:
[Job 30] Completed (spm_l2analysis.onesampttestdes).
211018-12:51:19,711 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 14 jobs ready. Free memory (GB): 5.23/5.23, Free processors: 4/4.
211018-12:51:19,782 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2estimate".
211018-12:51:19,788 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2estimate".
211018-12:51:19,787 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2estimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0007_fwhm_id_8/level2estimate".
211018-12:51:19,789 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2estimate".
211018-12:51:19,794 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2estimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0007_fwhm_id_4/level2estimate".
211018-12:51:19,799 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2estimate".
211018-12:51:19,800 nipype.workflow INFO:
[Node] Running "level2estimate" ("nipype.interfaces.spm.model.EstimateModel")
211018-12:51:19,798 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2estimate".
211018-12:51:19,808 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2estimate".
211018-12:51:19,806 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2estimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0006_fwhm_id_8/level2estimate".
211018-12:51:19,810 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2estimate".
211018-12:51:19,813 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2estimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0006_fwhm_id_4/level2estimate".
211018-12:51:19,816 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2estimate".
211018-12:51:19,808 nipype.workflow INFO:
[Node] Running "level2estimate" ("nipype.interfaces.spm.model.EstimateModel")
211018-12:51:19,821 nipype.workflow INFO:
[Node] Running "level2estimate" ("nipype.interfaces.spm.model.EstimateModel")
211018-12:51:19,833 nipype.workflow INFO:
[Node] Running "level2estimate" ("nipype.interfaces.spm.model.EstimateModel")
211018-12:51:21,699 nipype.workflow INFO:
[MultiProc] Running 4 tasks, and 10 jobs ready. Free memory (GB): 4.43/5.23, Free processors: 0/4.
Currently running:
* spm_l2analysis.level2estimate
* spm_l2analysis.level2estimate
* spm_l2analysis.level2estimate
* spm_l2analysis.level2estimate
211018-12:52:04,685 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2estimate".
211018-12:52:04,688 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2estimate".
211018-12:52:04,697 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2estimate".
211018-12:52:04,698 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2estimate".
211018-12:52:05,533 nipype.workflow INFO:
[Job 16] Completed (spm_l2analysis.level2estimate).
211018-12:52:05,543 nipype.workflow INFO:
[Job 21] Completed (spm_l2analysis.level2estimate).
211018-12:52:05,545 nipype.workflow INFO:
[Job 26] Completed (spm_l2analysis.level2estimate).
211018-12:52:05,547 nipype.workflow INFO:
[Job 31] Completed (spm_l2analysis.level2estimate).
211018-12:52:05,551 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 14 jobs ready. Free memory (GB): 5.23/5.23, Free processors: 4/4.
211018-12:52:05,677 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2conestimate".
211018-12:52:05,682 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2conestimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0007_fwhm_id_8/level2conestimate".
211018-12:52:05,684 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2conestimate".
211018-12:52:05,692 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2conestimate".
211018-12:52:05,698 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2conestimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0007_fwhm_id_4/level2conestimate".
211018-12:52:05,701 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2conestimate".
211018-12:52:05,710 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2conestimate".
211018-12:52:05,711 nipype.workflow INFO:
[Node] Running "level2conestimate" ("nipype.interfaces.spm.model.EstimateContrast")
211018-12:52:05,715 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2conestimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0006_fwhm_id_8/level2conestimate".
211018-12:52:05,722 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2conestimate".
211018-12:52:05,722 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2conestimate".
211018-12:52:05,729 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2conestimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0006_fwhm_id_4/level2conestimate".
211018-12:52:05,735 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2conestimate".
211018-12:52:05,740 nipype.workflow INFO:
[Node] Running "level2conestimate" ("nipype.interfaces.spm.model.EstimateContrast")
211018-12:52:05,752 nipype.workflow INFO:
[Node] Running "level2conestimate" ("nipype.interfaces.spm.model.EstimateContrast")
211018-12:52:05,763 nipype.workflow INFO:
[Node] Running "level2conestimate" ("nipype.interfaces.spm.model.EstimateContrast")
211018-12:52:07,535 nipype.workflow INFO:
[MultiProc] Running 4 tasks, and 10 jobs ready. Free memory (GB): 4.43/5.23, Free processors: 0/4.
Currently running:
* spm_l2analysis.level2conestimate
* spm_l2analysis.level2conestimate
* spm_l2analysis.level2conestimate
* spm_l2analysis.level2conestimate
211018-12:52:19,561 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2conestimate".
211018-12:52:19,728 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2conestimate".
211018-12:52:19,729 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2conestimate".
211018-12:52:19,745 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2conestimate".
211018-12:52:21,559 nipype.workflow INFO:
[Job 17] Completed (spm_l2analysis.level2conestimate).
211018-12:52:21,563 nipype.workflow INFO:
[Job 22] Completed (spm_l2analysis.level2conestimate).
211018-12:52:21,565 nipype.workflow INFO:
[Job 27] Completed (spm_l2analysis.level2conestimate).
211018-12:52:21,568 nipype.workflow INFO:
[Job 32] Completed (spm_l2analysis.level2conestimate).
211018-12:52:21,572 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 14 jobs ready. Free memory (GB): 5.23/5.23, Free processors: 4/4.
211018-12:52:21,663 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2thresh".
211018-12:52:21,669 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2thresh" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0007_fwhm_id_8/level2thresh".
211018-12:52:21,672 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2thresh".
211018-12:52:21,672 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2thresh".
211018-12:52:21,681 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2thresh" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0007_fwhm_id_4/level2thresh".
211018-12:52:21,686 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2thresh".
211018-12:52:21,698 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2thresh".
211018-12:52:21,698 nipype.workflow INFO:
[Node] Running "level2thresh" ("nipype.interfaces.spm.model.Threshold")
211018-12:52:21,704 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2thresh" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0006_fwhm_id_8/level2thresh".
211018-12:52:21,711 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2thresh".
211018-12:52:21,715 nipype.workflow INFO:
[Node] Running "level2thresh" ("nipype.interfaces.spm.model.Threshold")
211018-12:52:21,745 nipype.workflow INFO:
[Node] Running "level2thresh" ("nipype.interfaces.spm.model.Threshold")
211018-12:52:21,751 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2thresh".
211018-12:52:21,760 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2thresh" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0006_fwhm_id_4/level2thresh".
211018-12:52:21,765 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2thresh".
211018-12:52:21,795 nipype.workflow INFO:
[Node] Running "level2thresh" ("nipype.interfaces.spm.model.Threshold")
211018-12:52:23,562 nipype.workflow INFO:
[MultiProc] Running 4 tasks, and 10 jobs ready. Free memory (GB): 4.43/5.23, Free processors: 0/4.
Currently running:
* spm_l2analysis.level2thresh
* spm_l2analysis.level2thresh
* spm_l2analysis.level2thresh
* spm_l2analysis.level2thresh
211018-12:52:29,604 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2thresh".
211018-12:52:29,703 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2thresh".
211018-12:52:29,715 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2thresh".
211018-12:52:29,718 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2thresh".
211018-12:52:31,569 nipype.workflow INFO:
[Job 18] Completed (spm_l2analysis.level2thresh).
211018-12:52:31,571 nipype.workflow INFO:
[Job 23] Completed (spm_l2analysis.level2thresh).
211018-12:52:31,573 nipype.workflow INFO:
[Job 28] Completed (spm_l2analysis.level2thresh).
211018-12:52:31,577 nipype.workflow INFO:
[Job 33] Completed (spm_l2analysis.level2thresh).
211018-12:52:31,582 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 14 jobs ready. Free memory (GB): 5.23/5.23, Free processors: 4/4.
211018-12:52:32,357 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.datasink".
211018-12:52:32,361 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.datasink" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0007_fwhm_id_8/datasink".
211018-12:52:32,363 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.datasink".
211018-12:52:32,371 nipype.workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
211018-12:52:32,378 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0007_fwhm_id_8/SPM.mat -> /output/datasink/2ndLevel/ants_con_0007_fwhm8/SPM.mat
211018-12:52:32,382 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0007_fwhm_id_8/spmT_0001.nii -> /output/datasink/2ndLevel/ants_con_0007_fwhm8/spmT_0001.nii
211018-12:52:32,385 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0007_fwhm_id_8/con_0001.nii -> /output/datasink/2ndLevel/ants_con_0007_fwhm8/con_0001.nii
211018-12:52:32,388 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0007_fwhm_id_8/spmT_0001_thr.nii -> /output/datasink/2ndLevel/ants_con_0007_fwhm8/spmT_0001_thr.nii
211018-12:52:32,396 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.datasink".
211018-12:52:32,398 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.datasink".
211018-12:52:32,406 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.datasink" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0007_fwhm_id_4/datasink".
211018-12:52:32,409 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.datasink".
211018-12:52:32,417 nipype.workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
211018-12:52:32,423 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0007_fwhm_id_4/SPM.mat -> /output/datasink/2ndLevel/ants_con_0007_fwhm4/SPM.mat
211018-12:52:32,426 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0007_fwhm_id_4/spmT_0001.nii -> /output/datasink/2ndLevel/ants_con_0007_fwhm4/spmT_0001.nii
211018-12:52:32,429 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0007_fwhm_id_4/con_0001.nii -> /output/datasink/2ndLevel/ants_con_0007_fwhm4/con_0001.nii
211018-12:52:32,434 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.datasink".
211018-12:52:32,433 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0007_fwhm_id_4/spmT_0001_thr.nii -> /output/datasink/2ndLevel/ants_con_0007_fwhm4/spmT_0001_thr.nii
211018-12:52:32,441 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.datasink" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0006_fwhm_id_8/datasink".
211018-12:52:32,444 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.datasink".
211018-12:52:32,444 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.datasink".
211018-12:52:32,454 nipype.workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
211018-12:52:32,458 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0006_fwhm_id_8/SPM.mat -> /output/datasink/2ndLevel/ants_con_0006_fwhm8/SPM.mat
211018-12:52:32,462 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0006_fwhm_id_8/spmT_0001.nii -> /output/datasink/2ndLevel/ants_con_0006_fwhm8/spmT_0001.nii
211018-12:52:32,465 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0006_fwhm_id_8/con_0001.nii -> /output/datasink/2ndLevel/ants_con_0006_fwhm8/con_0001.nii
211018-12:52:32,468 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0006_fwhm_id_8/spmT_0001_thr.nii -> /output/datasink/2ndLevel/ants_con_0006_fwhm8/spmT_0001_thr.nii
211018-12:52:32,472 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.datasink".
211018-12:52:32,477 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.datasink".
211018-12:52:32,478 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.datasink" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0006_fwhm_id_4/datasink".
211018-12:52:32,479 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.datasink".
211018-12:52:32,487 nipype.workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
211018-12:52:32,489 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0006_fwhm_id_4/SPM.mat -> /output/datasink/2ndLevel/ants_con_0006_fwhm4/SPM.mat
211018-12:52:32,492 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0006_fwhm_id_4/spmT_0001.nii -> /output/datasink/2ndLevel/ants_con_0006_fwhm4/spmT_0001.nii
211018-12:52:32,494 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0006_fwhm_id_4/con_0001.nii -> /output/datasink/2ndLevel/ants_con_0006_fwhm4/con_0001.nii
211018-12:52:32,495 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0006_fwhm_id_4/spmT_0001_thr.nii -> /output/datasink/2ndLevel/ants_con_0006_fwhm4/spmT_0001_thr.nii
211018-12:52:32,500 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.datasink".
211018-12:52:33,573 nipype.workflow INFO:
[Job 19] Completed (spm_l2analysis.datasink).
211018-12:52:33,575 nipype.workflow INFO:
[Job 24] Completed (spm_l2analysis.datasink).
211018-12:52:33,577 nipype.workflow INFO:
[Job 29] Completed (spm_l2analysis.datasink).
211018-12:52:33,580 nipype.workflow INFO:
[Job 34] Completed (spm_l2analysis.datasink).
211018-12:52:33,584 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 10 jobs ready. Free memory (GB): 5.23/5.23, Free processors: 4/4.
211018-12:52:33,679 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.onesampttestdes".
211018-12:52:33,683 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.onesampttestdes" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0005_fwhm_id_8/onesampttestdes".
211018-12:52:33,686 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.onesampttestdes".
211018-12:52:33,693 nipype.workflow INFO:
[Node] Running "onesampttestdes" ("nipype.interfaces.spm.model.OneSampleTTestDesign")
211018-12:52:33,696 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.onesampttestdes".
211018-12:52:33,702 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.onesampttestdes" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0005_fwhm_id_4/onesampttestdes".
211018-12:52:33,704 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.onesampttestdes".
211018-12:52:33,711 nipype.workflow INFO:
[Node] Running "onesampttestdes" ("nipype.interfaces.spm.model.OneSampleTTestDesign")
211018-12:52:33,719 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.onesampttestdes".
211018-12:52:33,726 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.onesampttestdes" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0004_fwhm_id_8/onesampttestdes".
211018-12:52:33,729 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.onesampttestdes".
211018-12:52:33,740 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.onesampttestdes".
211018-12:52:33,740 nipype.workflow INFO:
[Node] Running "onesampttestdes" ("nipype.interfaces.spm.model.OneSampleTTestDesign")
211018-12:52:33,749 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.onesampttestdes" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0004_fwhm_id_4/onesampttestdes".
211018-12:52:33,753 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.onesampttestdes".
211018-12:52:33,766 nipype.workflow INFO:
[Node] Running "onesampttestdes" ("nipype.interfaces.spm.model.OneSampleTTestDesign")
211018-12:52:35,574 nipype.workflow INFO:
[MultiProc] Running 4 tasks, and 6 jobs ready. Free memory (GB): 4.43/5.23, Free processors: 0/4.
Currently running:
* spm_l2analysis.onesampttestdes
* spm_l2analysis.onesampttestdes
* spm_l2analysis.onesampttestdes
* spm_l2analysis.onesampttestdes
211018-12:52:42,24 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.onesampttestdes".
211018-12:52:42,24 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.onesampttestdes".
211018-12:52:42,48 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.onesampttestdes".
211018-12:52:42,53 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.onesampttestdes".
211018-12:52:43,583 nipype.workflow INFO:
[Job 35] Completed (spm_l2analysis.onesampttestdes).
211018-12:52:43,585 nipype.workflow INFO:
[Job 40] Completed (spm_l2analysis.onesampttestdes).
211018-12:52:43,586 nipype.workflow INFO:
[Job 45] Completed (spm_l2analysis.onesampttestdes).
211018-12:52:43,588 nipype.workflow INFO:
[Job 50] Completed (spm_l2analysis.onesampttestdes).
211018-12:52:43,593 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 10 jobs ready. Free memory (GB): 5.23/5.23, Free processors: 4/4.
211018-12:52:43,671 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2estimate".
211018-12:52:43,677 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2estimate".
211018-12:52:43,677 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2estimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0005_fwhm_id_8/level2estimate".
211018-12:52:43,679 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2estimate".
211018-12:52:43,689 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2estimate".
211018-12:52:43,686 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2estimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0005_fwhm_id_4/level2estimate".
211018-12:52:43,692 nipype.workflow INFO:
[Node] Running "level2estimate" ("nipype.interfaces.spm.model.EstimateModel")
211018-12:52:43,707 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2estimate".
211018-12:52:43,691 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2estimate".
211018-12:52:43,700 nipype.workflow INFO:
[Node] Running "level2estimate" ("nipype.interfaces.spm.model.EstimateModel")
211018-12:52:43,703 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2estimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0004_fwhm_id_8/level2estimate".
211018-12:52:43,706 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2estimate".
211018-12:52:43,716 nipype.workflow INFO:
[Node] Running "level2estimate" ("nipype.interfaces.spm.model.EstimateModel")
211018-12:52:43,718 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2estimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0004_fwhm_id_4/level2estimate".
211018-12:52:43,727 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2estimate".
211018-12:52:43,737 nipype.workflow INFO:
[Node] Running "level2estimate" ("nipype.interfaces.spm.model.EstimateModel")
211018-12:52:45,586 nipype.workflow INFO:
[MultiProc] Running 4 tasks, and 6 jobs ready. Free memory (GB): 4.43/5.23, Free processors: 0/4.
Currently running:
* spm_l2analysis.level2estimate
* spm_l2analysis.level2estimate
* spm_l2analysis.level2estimate
* spm_l2analysis.level2estimate
211018-12:53:28,549 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2estimate".
211018-12:53:30,123 nipype.workflow INFO:
[Job 41] Completed (spm_l2analysis.level2estimate).
211018-12:53:30,130 nipype.workflow INFO:
[MultiProc] Running 3 tasks, and 7 jobs ready. Free memory (GB): 4.63/5.23, Free processors: 1/4.
Currently running:
* spm_l2analysis.level2estimate
* spm_l2analysis.level2estimate
* spm_l2analysis.level2estimate
211018-12:53:30,145 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2estimate".
211018-12:53:30,347 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2conestimate".
211018-12:53:30,356 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2conestimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0005_fwhm_id_4/level2conestimate".
211018-12:53:30,368 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2conestimate".
211018-12:53:30,400 nipype.workflow INFO:
[Node] Running "level2conestimate" ("nipype.interfaces.spm.model.EstimateContrast")
211018-12:53:30,424 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2estimate".
211018-12:53:30,466 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2estimate".
211018-12:53:32,125 nipype.workflow INFO:
[Job 36] Completed (spm_l2analysis.level2estimate).
211018-12:53:32,127 nipype.workflow INFO:
[Job 46] Completed (spm_l2analysis.level2estimate).
211018-12:53:32,129 nipype.workflow INFO:
[Job 51] Completed (spm_l2analysis.level2estimate).
211018-12:53:32,134 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 9 jobs ready. Free memory (GB): 5.03/5.23, Free processors: 3/4.
Currently running:
* spm_l2analysis.level2conestimate
211018-12:53:32,229 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2conestimate".
211018-12:53:32,233 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2conestimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0005_fwhm_id_8/level2conestimate".
211018-12:53:32,235 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2conestimate".
211018-12:53:32,241 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2conestimate".
211018-12:53:32,247 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2conestimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0004_fwhm_id_8/level2conestimate".
211018-12:53:32,250 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2conestimate".
211018-12:53:32,254 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2conestimate".
211018-12:53:32,259 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2conestimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0004_fwhm_id_4/level2conestimate".
211018-12:53:32,261 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2conestimate".
211018-12:53:32,272 nipype.workflow INFO:
[Node] Running "level2conestimate" ("nipype.interfaces.spm.model.EstimateContrast")
211018-12:53:32,278 nipype.workflow INFO:
[Node] Running "level2conestimate" ("nipype.interfaces.spm.model.EstimateContrast")
211018-12:53:32,279 nipype.workflow INFO:
[Node] Running "level2conestimate" ("nipype.interfaces.spm.model.EstimateContrast")
211018-12:53:34,127 nipype.workflow INFO:
[MultiProc] Running 4 tasks, and 6 jobs ready. Free memory (GB): 4.43/5.23, Free processors: 0/4.
Currently running:
* spm_l2analysis.level2conestimate
* spm_l2analysis.level2conestimate
* spm_l2analysis.level2conestimate
* spm_l2analysis.level2conestimate
211018-12:53:42,434 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2conestimate".
211018-12:53:43,531 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2conestimate".
211018-12:53:43,972 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2conestimate".
211018-12:53:43,986 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2conestimate".
211018-12:53:44,138 nipype.workflow INFO:
[Job 42] Completed (spm_l2analysis.level2conestimate).
211018-12:53:44,142 nipype.workflow INFO:
[Job 37] Completed (spm_l2analysis.level2conestimate).
211018-12:53:44,145 nipype.workflow INFO:
[Job 47] Completed (spm_l2analysis.level2conestimate).
211018-12:53:44,150 nipype.workflow INFO:
[Job 52] Completed (spm_l2analysis.level2conestimate).
211018-12:53:44,154 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 10 jobs ready. Free memory (GB): 5.23/5.23, Free processors: 4/4.
211018-12:53:44,246 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2thresh".
211018-12:53:44,252 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2thresh" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0005_fwhm_id_8/level2thresh".
211018-12:53:44,255 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2thresh".
211018-12:53:44,258 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2thresh".
211018-12:53:44,263 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2thresh" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0005_fwhm_id_4/level2thresh".
211018-12:53:44,270 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2thresh".
211018-12:53:44,276 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2thresh".
211018-12:53:44,282 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2thresh" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0004_fwhm_id_8/level2thresh".
211018-12:53:44,288 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2thresh".
211018-12:53:44,289 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2thresh".
211018-12:53:44,278 nipype.workflow INFO:
[Node] Running "level2thresh" ("nipype.interfaces.spm.model.Threshold")
211018-12:53:44,294 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2thresh" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0004_fwhm_id_4/level2thresh".
211018-12:53:44,293 nipype.workflow INFO:
[Node] Running "level2thresh" ("nipype.interfaces.spm.model.Threshold")
211018-12:53:44,303 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2thresh".
211018-12:53:44,316 nipype.workflow INFO:
[Node] Running "level2thresh" ("nipype.interfaces.spm.model.Threshold")
211018-12:53:44,326 nipype.workflow INFO:
[Node] Running "level2thresh" ("nipype.interfaces.spm.model.Threshold")
211018-12:53:46,141 nipype.workflow INFO:
[MultiProc] Running 4 tasks, and 6 jobs ready. Free memory (GB): 4.43/5.23, Free processors: 0/4.
Currently running:
* spm_l2analysis.level2thresh
* spm_l2analysis.level2thresh
* spm_l2analysis.level2thresh
* spm_l2analysis.level2thresh
211018-12:53:52,210 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2thresh".
211018-12:53:52,331 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2thresh".
211018-12:53:52,388 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2thresh".
211018-12:53:52,486 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2thresh".
211018-12:53:54,172 nipype.workflow INFO:
[Job 38] Completed (spm_l2analysis.level2thresh).
211018-12:53:54,175 nipype.workflow INFO:
[Job 43] Completed (spm_l2analysis.level2thresh).
211018-12:53:54,176 nipype.workflow INFO:
[Job 48] Completed (spm_l2analysis.level2thresh).
211018-12:53:54,180 nipype.workflow INFO:
[Job 53] Completed (spm_l2analysis.level2thresh).
211018-12:53:54,185 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 10 jobs ready. Free memory (GB): 5.23/5.23, Free processors: 4/4.
211018-12:53:54,300 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.datasink".
211018-12:53:54,306 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.datasink" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0005_fwhm_id_8/datasink".
211018-12:53:54,309 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.datasink".
211018-12:53:54,324 nipype.workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
211018-12:53:54,330 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0005_fwhm_id_8/SPM.mat -> /output/datasink/2ndLevel/ants_con_0005_fwhm8/SPM.mat
211018-12:53:54,333 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0005_fwhm_id_8/spmT_0001.nii -> /output/datasink/2ndLevel/ants_con_0005_fwhm8/spmT_0001.nii
211018-12:53:54,335 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0005_fwhm_id_8/con_0001.nii -> /output/datasink/2ndLevel/ants_con_0005_fwhm8/con_0001.nii
211018-12:53:54,338 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0005_fwhm_id_8/spmT_0001_thr.nii -> /output/datasink/2ndLevel/ants_con_0005_fwhm8/spmT_0001_thr.nii
211018-12:53:54,347 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.datasink".
211018-12:53:54,349 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.datasink".
211018-12:53:54,356 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.datasink" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0005_fwhm_id_4/datasink".
211018-12:53:54,359 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.datasink".
211018-12:53:54,367 nipype.workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
211018-12:53:54,370 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0005_fwhm_id_4/SPM.mat -> /output/datasink/2ndLevel/ants_con_0005_fwhm4/SPM.mat
211018-12:53:54,376 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0005_fwhm_id_4/spmT_0001.nii -> /output/datasink/2ndLevel/ants_con_0005_fwhm4/spmT_0001.nii
211018-12:53:54,379 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0005_fwhm_id_4/con_0001.nii -> /output/datasink/2ndLevel/ants_con_0005_fwhm4/con_0001.nii
211018-12:53:54,385 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0005_fwhm_id_4/spmT_0001_thr.nii -> /output/datasink/2ndLevel/ants_con_0005_fwhm4/spmT_0001_thr.nii
211018-12:53:54,394 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.datasink".
211018-12:53:54,403 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.datasink".
211018-12:53:54,409 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.datasink" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0004_fwhm_id_8/datasink".
211018-12:53:54,413 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.datasink".
211018-12:53:54,423 nipype.workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
211018-12:53:54,426 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0004_fwhm_id_8/SPM.mat -> /output/datasink/2ndLevel/ants_con_0004_fwhm8/SPM.mat
211018-12:53:54,430 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0004_fwhm_id_8/spmT_0001.nii -> /output/datasink/2ndLevel/ants_con_0004_fwhm8/spmT_0001.nii
211018-12:53:54,433 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0004_fwhm_id_8/con_0001.nii -> /output/datasink/2ndLevel/ants_con_0004_fwhm8/con_0001.nii
211018-12:53:54,437 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0004_fwhm_id_8/spmT_0001_thr.nii -> /output/datasink/2ndLevel/ants_con_0004_fwhm8/spmT_0001_thr.nii
211018-12:53:54,445 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.datasink".
211018-12:53:54,449 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.datasink".
211018-12:53:54,455 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.datasink" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0004_fwhm_id_4/datasink".
211018-12:53:54,457 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.datasink".
211018-12:53:54,469 nipype.workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
211018-12:53:54,473 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0004_fwhm_id_4/SPM.mat -> /output/datasink/2ndLevel/ants_con_0004_fwhm4/SPM.mat
211018-12:53:54,476 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0004_fwhm_id_4/spmT_0001.nii -> /output/datasink/2ndLevel/ants_con_0004_fwhm4/spmT_0001.nii
211018-12:53:54,478 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0004_fwhm_id_4/con_0001.nii -> /output/datasink/2ndLevel/ants_con_0004_fwhm4/con_0001.nii
211018-12:53:54,481 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0004_fwhm_id_4/spmT_0001_thr.nii -> /output/datasink/2ndLevel/ants_con_0004_fwhm4/spmT_0001_thr.nii
211018-12:53:54,488 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.datasink".
211018-12:53:56,176 nipype.workflow INFO:
[Job 39] Completed (spm_l2analysis.datasink).
211018-12:53:56,178 nipype.workflow INFO:
[Job 44] Completed (spm_l2analysis.datasink).
211018-12:53:56,180 nipype.workflow INFO:
[Job 49] Completed (spm_l2analysis.datasink).
211018-12:53:56,182 nipype.workflow INFO:
[Job 54] Completed (spm_l2analysis.datasink).
211018-12:53:56,185 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 6 jobs ready. Free memory (GB): 5.23/5.23, Free processors: 4/4.
211018-12:53:56,285 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.onesampttestdes".
211018-12:53:56,291 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.onesampttestdes" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0003_fwhm_id_8/onesampttestdes".
211018-12:53:56,293 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.onesampttestdes".
211018-12:53:56,301 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.onesampttestdes".
211018-12:53:56,300 nipype.workflow INFO:
[Node] Running "onesampttestdes" ("nipype.interfaces.spm.model.OneSampleTTestDesign")
211018-12:53:56,306 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.onesampttestdes" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0003_fwhm_id_4/onesampttestdes".
211018-12:53:56,308 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.onesampttestdes".
211018-12:53:56,315 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.onesampttestdes".
211018-12:53:56,314 nipype.workflow INFO:
[Node] Running "onesampttestdes" ("nipype.interfaces.spm.model.OneSampleTTestDesign")
211018-12:53:56,321 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.onesampttestdes" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0002_fwhm_id_8/onesampttestdes".
211018-12:53:56,326 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.onesampttestdes".
211018-12:53:56,326 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.onesampttestdes".
211018-12:53:56,332 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.onesampttestdes" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0002_fwhm_id_4/onesampttestdes".
211018-12:53:56,334 nipype.workflow INFO:
[Node] Running "onesampttestdes" ("nipype.interfaces.spm.model.OneSampleTTestDesign")
211018-12:53:56,335 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.onesampttestdes".
211018-12:53:56,346 nipype.workflow INFO:
[Node] Running "onesampttestdes" ("nipype.interfaces.spm.model.OneSampleTTestDesign")
211018-12:53:58,179 nipype.workflow INFO:
[MultiProc] Running 4 tasks, and 2 jobs ready. Free memory (GB): 4.43/5.23, Free processors: 0/4.
Currently running:
* spm_l2analysis.onesampttestdes
* spm_l2analysis.onesampttestdes
* spm_l2analysis.onesampttestdes
* spm_l2analysis.onesampttestdes
211018-12:54:04,459 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.onesampttestdes".
211018-12:54:04,519 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.onesampttestdes".
211018-12:54:04,551 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.onesampttestdes".
211018-12:54:04,571 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.onesampttestdes".
211018-12:54:06,188 nipype.workflow INFO:
[Job 55] Completed (spm_l2analysis.onesampttestdes).
211018-12:54:06,191 nipype.workflow INFO:
[Job 60] Completed (spm_l2analysis.onesampttestdes).
211018-12:54:06,193 nipype.workflow INFO:
[Job 65] Completed (spm_l2analysis.onesampttestdes).
211018-12:54:06,195 nipype.workflow INFO:
[Job 70] Completed (spm_l2analysis.onesampttestdes).
211018-12:54:06,199 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 6 jobs ready. Free memory (GB): 5.23/5.23, Free processors: 4/4.
211018-12:54:06,304 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2estimate".
211018-12:54:06,310 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2estimate".
211018-12:54:06,309 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2estimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0003_fwhm_id_8/level2estimate".
211018-12:54:06,312 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2estimate".
211018-12:54:06,316 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2estimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0003_fwhm_id_4/level2estimate".
211018-12:54:06,319 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2estimate".
211018-12:54:06,329 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2estimate".
211018-12:54:06,327 nipype.workflow INFO:
[Node] Running "level2estimate" ("nipype.interfaces.spm.model.EstimateModel")
211018-12:54:06,330 nipype.workflow INFO:
[Node] Running "level2estimate" ("nipype.interfaces.spm.model.EstimateModel")
211018-12:54:06,335 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2estimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0002_fwhm_id_8/level2estimate".
211018-12:54:06,340 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2estimate".
211018-12:54:06,345 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2estimate".
211018-12:54:06,352 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2estimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0002_fwhm_id_4/level2estimate".
211018-12:54:06,354 nipype.workflow INFO:
[Node] Running "level2estimate" ("nipype.interfaces.spm.model.EstimateModel")
211018-12:54:06,359 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2estimate".
211018-12:54:06,368 nipype.workflow INFO:
[Node] Running "level2estimate" ("nipype.interfaces.spm.model.EstimateModel")
211018-12:54:08,191 nipype.workflow INFO:
[MultiProc] Running 4 tasks, and 2 jobs ready. Free memory (GB): 4.43/5.23, Free processors: 0/4.
Currently running:
* spm_l2analysis.level2estimate
* spm_l2analysis.level2estimate
* spm_l2analysis.level2estimate
* spm_l2analysis.level2estimate
211018-12:54:39,861 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2estimate".
211018-12:54:39,873 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2estimate".
211018-12:54:40,201 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2estimate".
211018-12:54:40,223 nipype.workflow INFO:
[Job 56] Completed (spm_l2analysis.level2estimate).
211018-12:54:40,225 nipype.workflow INFO:
[Job 61] Completed (spm_l2analysis.level2estimate).
211018-12:54:40,228 nipype.workflow INFO:
[Job 66] Completed (spm_l2analysis.level2estimate).
211018-12:54:40,234 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 5.03/5.23, Free processors: 3/4.
Currently running:
* spm_l2analysis.level2estimate
211018-12:54:40,330 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2conestimate".
211018-12:54:40,336 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2conestimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0003_fwhm_id_8/level2conestimate".
211018-12:54:40,340 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2conestimate".
211018-12:54:40,354 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2conestimate".
211018-12:54:40,361 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2conestimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0003_fwhm_id_4/level2conestimate".
211018-12:54:40,364 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2conestimate".
211018-12:54:40,371 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2conestimate".
211018-12:54:40,374 nipype.workflow INFO:
[Node] Running "level2conestimate" ("nipype.interfaces.spm.model.EstimateContrast")
211018-12:54:40,379 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2conestimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0002_fwhm_id_8/level2conestimate".
211018-12:54:40,390 nipype.workflow INFO:
[Node] Running "level2conestimate" ("nipype.interfaces.spm.model.EstimateContrast")
211018-12:54:40,387 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2conestimate".
211018-12:54:40,413 nipype.workflow INFO:
[Node] Running "level2conestimate" ("nipype.interfaces.spm.model.EstimateContrast")
211018-12:54:40,460 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2estimate".
211018-12:54:42,224 nipype.workflow INFO:
[Job 71] Completed (spm_l2analysis.level2estimate).
211018-12:54:42,231 nipype.workflow INFO:
[MultiProc] Running 3 tasks, and 3 jobs ready. Free memory (GB): 4.63/5.23, Free processors: 1/4.
Currently running:
* spm_l2analysis.level2conestimate
* spm_l2analysis.level2conestimate
* spm_l2analysis.level2conestimate
211018-12:54:42,319 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2conestimate".
211018-12:54:42,325 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2conestimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0002_fwhm_id_4/level2conestimate".
211018-12:54:42,329 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2conestimate".
211018-12:54:42,482 nipype.workflow INFO:
[Node] Running "level2conestimate" ("nipype.interfaces.spm.model.EstimateContrast")
211018-12:54:44,228 nipype.workflow INFO:
[MultiProc] Running 4 tasks, and 2 jobs ready. Free memory (GB): 4.43/5.23, Free processors: 0/4.
Currently running:
* spm_l2analysis.level2conestimate
* spm_l2analysis.level2conestimate
* spm_l2analysis.level2conestimate
* spm_l2analysis.level2conestimate
211018-12:54:55,310 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2conestimate".
211018-12:54:55,331 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2conestimate".
211018-12:54:55,484 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2conestimate".
211018-12:54:56,285 nipype.workflow INFO:
[Job 57] Completed (spm_l2analysis.level2conestimate).
211018-12:54:56,288 nipype.workflow INFO:
[Job 62] Completed (spm_l2analysis.level2conestimate).
211018-12:54:56,292 nipype.workflow INFO:
[Job 67] Completed (spm_l2analysis.level2conestimate).
211018-12:54:56,296 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 5.03/5.23, Free processors: 3/4.
Currently running:
* spm_l2analysis.level2conestimate
211018-12:54:56,404 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2thresh".
211018-12:54:56,411 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2thresh" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0003_fwhm_id_8/level2thresh".
211018-12:54:56,414 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2thresh".
211018-12:54:56,414 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2thresh".
211018-12:54:56,422 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2thresh" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0003_fwhm_id_4/level2thresh".
211018-12:54:56,428 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2thresh".
211018-12:54:56,434 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2thresh".
211018-12:54:56,443 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2thresh" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0002_fwhm_id_8/level2thresh".
211018-12:54:56,448 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2thresh".
211018-12:54:56,448 nipype.workflow INFO:
[Node] Running "level2thresh" ("nipype.interfaces.spm.model.Threshold")
211018-12:54:56,460 nipype.workflow INFO:
[Node] Running "level2thresh" ("nipype.interfaces.spm.model.Threshold")
211018-12:54:56,473 nipype.workflow INFO:
[Node] Running "level2thresh" ("nipype.interfaces.spm.model.Threshold")
211018-12:54:56,613 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2conestimate".
211018-12:54:58,287 nipype.workflow INFO:
[Job 72] Completed (spm_l2analysis.level2conestimate).
211018-12:54:58,292 nipype.workflow INFO:
[MultiProc] Running 3 tasks, and 3 jobs ready. Free memory (GB): 4.63/5.23, Free processors: 1/4.
Currently running:
* spm_l2analysis.level2thresh
* spm_l2analysis.level2thresh
* spm_l2analysis.level2thresh
211018-12:54:58,396 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2thresh".
211018-12:54:58,402 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2thresh" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0002_fwhm_id_4/level2thresh".
211018-12:54:58,405 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2thresh".
211018-12:54:58,428 nipype.workflow INFO:
[Node] Running "level2thresh" ("nipype.interfaces.spm.model.Threshold")
211018-12:55:00,290 nipype.workflow INFO:
[MultiProc] Running 4 tasks, and 2 jobs ready. Free memory (GB): 4.43/5.23, Free processors: 0/4.
Currently running:
* spm_l2analysis.level2thresh
* spm_l2analysis.level2thresh
* spm_l2analysis.level2thresh
* spm_l2analysis.level2thresh
211018-12:55:03,138 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2thresh".
211018-12:55:03,207 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2thresh".
211018-12:55:03,277 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2thresh".
211018-12:55:04,293 nipype.workflow INFO:
[Job 58] Completed (spm_l2analysis.level2thresh).
211018-12:55:04,295 nipype.workflow INFO:
[Job 63] Completed (spm_l2analysis.level2thresh).
211018-12:55:04,297 nipype.workflow INFO:
[Job 68] Completed (spm_l2analysis.level2thresh).
211018-12:55:04,300 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 5.03/5.23, Free processors: 3/4.
Currently running:
* spm_l2analysis.level2thresh
211018-12:55:04,591 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.datasink".
211018-12:55:04,597 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.datasink" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0003_fwhm_id_8/datasink".
211018-12:55:04,602 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.datasink".
211018-12:55:04,615 nipype.workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
211018-12:55:04,625 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.datasink".
211018-12:55:04,625 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0003_fwhm_id_8/SPM.mat -> /output/datasink/2ndLevel/ants_con_0003_fwhm8/SPM.mat
211018-12:55:04,629 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0003_fwhm_id_8/spmT_0001.nii -> /output/datasink/2ndLevel/ants_con_0003_fwhm8/spmT_0001.nii
211018-12:55:04,632 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.datasink" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0003_fwhm_id_4/datasink".
211018-12:55:04,635 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.datasink".
211018-12:55:04,636 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0003_fwhm_id_8/con_0001.nii -> /output/datasink/2ndLevel/ants_con_0003_fwhm8/con_0001.nii
211018-12:55:04,644 nipype.workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
211018-12:55:04,646 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0003_fwhm_id_8/spmT_0001_thr.nii -> /output/datasink/2ndLevel/ants_con_0003_fwhm8/spmT_0001_thr.nii
211018-12:55:04,651 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0003_fwhm_id_4/SPM.mat -> /output/datasink/2ndLevel/ants_con_0003_fwhm4/SPM.mat
211018-12:55:04,658 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.datasink".
211018-12:55:04,654 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0003_fwhm_id_4/spmT_0001.nii -> /output/datasink/2ndLevel/ants_con_0003_fwhm4/spmT_0001.nii
211018-12:55:04,662 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0003_fwhm_id_4/con_0001.nii -> /output/datasink/2ndLevel/ants_con_0003_fwhm4/con_0001.nii
211018-12:55:04,665 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0003_fwhm_id_4/spmT_0001_thr.nii -> /output/datasink/2ndLevel/ants_con_0003_fwhm4/spmT_0001_thr.nii
211018-12:55:04,669 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.datasink".
211018-12:55:04,675 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.datasink".
211018-12:55:04,677 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.datasink" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0002_fwhm_id_8/datasink".
211018-12:55:04,680 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.datasink".
211018-12:55:04,688 nipype.workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
211018-12:55:04,691 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0002_fwhm_id_8/SPM.mat -> /output/datasink/2ndLevel/ants_con_0002_fwhm8/SPM.mat
211018-12:55:04,693 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0002_fwhm_id_8/spmT_0001.nii -> /output/datasink/2ndLevel/ants_con_0002_fwhm8/spmT_0001.nii
211018-12:55:04,695 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0002_fwhm_id_8/con_0001.nii -> /output/datasink/2ndLevel/ants_con_0002_fwhm8/con_0001.nii
211018-12:55:04,697 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0002_fwhm_id_8/spmT_0001_thr.nii -> /output/datasink/2ndLevel/ants_con_0002_fwhm8/spmT_0001_thr.nii
211018-12:55:04,703 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.datasink".
211018-12:55:05,59 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2thresh".
211018-12:55:06,298 nipype.workflow INFO:
[Job 73] Completed (spm_l2analysis.level2thresh).
211018-12:55:06,301 nipype.workflow INFO:
[Job 59] Completed (spm_l2analysis.datasink).
211018-12:55:06,303 nipype.workflow INFO:
[Job 64] Completed (spm_l2analysis.datasink).
211018-12:55:06,306 nipype.workflow INFO:
[Job 69] Completed (spm_l2analysis.datasink).
211018-12:55:06,309 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 3 jobs ready. Free memory (GB): 5.23/5.23, Free processors: 4/4.
211018-12:55:06,404 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.datasink".
211018-12:55:06,410 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.datasink" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0002_fwhm_id_4/datasink".
211018-12:55:06,412 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.datasink".
211018-12:55:06,419 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.onesampttestdes".
211018-12:55:06,420 nipype.workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
211018-12:55:06,426 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.onesampttestdes" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0001_fwhm_id_8/onesampttestdes".
211018-12:55:06,424 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0002_fwhm_id_4/SPM.mat -> /output/datasink/2ndLevel/ants_con_0002_fwhm4/SPM.mat
211018-12:55:06,429 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.onesampttestdes".
211018-12:55:06,434 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.onesampttestdes".
211018-12:55:06,435 nipype.workflow INFO:
[Node] Running "onesampttestdes" ("nipype.interfaces.spm.model.OneSampleTTestDesign")
211018-12:55:06,431 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0002_fwhm_id_4/spmT_0001.nii -> /output/datasink/2ndLevel/ants_con_0002_fwhm4/spmT_0001.nii
211018-12:55:06,443 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.onesampttestdes" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0001_fwhm_id_4/onesampttestdes".
211018-12:55:06,449 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0002_fwhm_id_4/con_0001.nii -> /output/datasink/2ndLevel/ants_con_0002_fwhm4/con_0001.nii
211018-12:55:06,459 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.onesampttestdes".
211018-12:55:06,475 nipype.interface INFO:
sub: /output/datasink/2ndLevel/_contrast_id_con_0002_fwhm_id_4/spmT_0001_thr.nii -> /output/datasink/2ndLevel/ants_con_0002_fwhm4/spmT_0001_thr.nii
211018-12:55:06,504 nipype.workflow INFO:
[Node] Running "onesampttestdes" ("nipype.interfaces.spm.model.OneSampleTTestDesign")
211018-12:55:06,544 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.datasink".
211018-12:55:08,299 nipype.workflow INFO:
[Job 74] Completed (spm_l2analysis.datasink).
211018-12:55:08,302 nipype.workflow INFO:
[MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 4.83/5.23, Free processors: 2/4.
Currently running:
* spm_l2analysis.onesampttestdes
* spm_l2analysis.onesampttestdes
211018-12:55:12,964 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.onesampttestdes".
211018-12:55:12,981 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.onesampttestdes".
211018-12:55:14,311 nipype.workflow INFO:
[Job 75] Completed (spm_l2analysis.onesampttestdes).
211018-12:55:14,315 nipype.workflow INFO:
[Job 80] Completed (spm_l2analysis.onesampttestdes).
211018-12:55:14,320 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 5.23/5.23, Free processors: 4/4.
211018-12:55:14,401 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2estimate".
211018-12:55:14,406 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2estimate".
211018-12:55:14,406 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2estimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0001_fwhm_id_8/level2estimate".
211018-12:55:14,408 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2estimate".
211018-12:55:14,414 nipype.workflow INFO:
[Node] Setting-up "spm_l2analysis.level2estimate" in "/output/workingdir/spm_l2analysis/_contrast_id_con_0001_fwhm_id_4/level2estimate".
211018-12:55:14,417 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2estimate".
211018-12:55:14,422 nipype.workflow INFO:
[Node] Running "level2estimate" ("nipype.interfaces.spm.model.EstimateModel")
211018-12:55:14,428 nipype.workflow INFO:
[Node] Running "level2estimate" ("nipype.interfaces.spm.model.EstimateModel")
211018-12:55:16,313 nipype.workflow INFO:
[MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 4.83/5.23, Free processors: 2/4.
Currently running:
* spm_l2analysis.level2estimate
* spm_l2analysis.level2estimate
211018-12:55:41,807 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2estimate".
211018-12:55:41,806 nipype.workflow INFO:
[Node] Finished "spm_l2analysis.level2estimate".
211018-12:55:42,338 nipype.workflow INFO:
[Job 76] Completed (spm_l2analysis.level2estimate).
211018-12:55:42,340 nipype.workflow INFO:
[Job 81] Completed (spm_l2analysis.level2estimate).
211018-12:55:42,345 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 5.23/5.23, Free processors: 4/4.
211018-12:55:42,439 nipype.workflow INFO:
[Node] Outdated cache found for "spm_l2analysis.level2conestimate".
211018-12:55:42,447 nipype.workflow INFO:
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* spm_l2analysis.level2conestimate
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<networkx.classes.digraph.DiGraph at 0x7f0047251150>
Visualize results¶
Now we create a lot of outputs, but how do they look like? And also, what was the influence of different smoothing kernels and normalization?
Keep in mind, that the group analysis was only done on N=7 subjects, and that we chose a voxel-wise threshold of p<0.005. Nonetheless, we corrected for multiple comparisons with a cluster-wise FDR threshold of p<0.05.
So let’s first look at the contrast average:
from nilearn.plotting import plot_stat_map
%matplotlib inline
anatimg = '/data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz'
plot_stat_map(
'/output/datasink/2ndLevel/ants_con_0001_fwhm4/spmT_0001_thr.nii', title='ants fwhm=4', dim=1,
bg_img=anatimg, threshold=2, vmax=8, display_mode='y', cut_coords=(-45, -30, -15, 0, 15), cmap='viridis');
plot_stat_map(
'/output/datasink/2ndLevel/spm_con_0001_fwhm4/spmT_0001_thr.nii', title='spm fwhm=4', dim=1,
bg_img=anatimg, threshold=2, vmax=8, display_mode='y', cut_coords=(-45, -30, -15, 0, 15), cmap='viridis');
plot_stat_map(
'/output/datasink/2ndLevel/ants_con_0001_fwhm8/spmT_0001_thr.nii', title='ants fwhm=8', dim=1,
bg_img=anatimg, threshold=2, vmax=8, display_mode='y', cut_coords=(-45, -30, -15, 0, 15), cmap='viridis');
plot_stat_map(
'/output/datasink/2ndLevel/spm_con_0001_fwhm8/spmT_0001_thr.nii', title='spm fwhm=8',
bg_img=anatimg, threshold=2, vmax=8, display_mode='y', cut_coords=(-45, -30, -15, 0, 15), cmap='viridis');
The results are more or less what you would expect: The peaks are more or less at the same places for the two normalization approaches and a wider smoothing has the effect of bigger clusters, while losing the sensitivity for smaller clusters.
Now, let’s see other contrast – Finger > others. Since we removed left-handed subjects, the activation is seen on the left part of the brain.
from nilearn.plotting import plot_stat_map
anatimg = '/data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz'
plot_stat_map(
'/output/datasink/2ndLevel/ants_con_0005_fwhm4/spmT_0001_thr.nii', title='ants fwhm=4', dim=1,
bg_img=anatimg, threshold=2, vmax=8, cmap='viridis', display_mode='y', cut_coords=(-45, -30, -15, 0, 15));
plot_stat_map(
'/output/datasink/2ndLevel/spm_con_0005_fwhm4/spmT_0001_thr.nii', title='spm fwhm=4', dim=1,
bg_img=anatimg, threshold=2, vmax=8, cmap='viridis', display_mode='y', cut_coords=(-45, -30, -15, 0, 15));
plot_stat_map(
'/output/datasink/2ndLevel/ants_con_0005_fwhm8/spmT_0001_thr.nii', title='ants fwhm=8', dim=1,
bg_img=anatimg, threshold=2, vmax=8, cmap='viridis', display_mode='y', cut_coords=(-45, -30, -15, 0, 15));
plot_stat_map(
'/output/datasink/2ndLevel/spm_con_0005_fwhm8/spmT_0001_thr.nii', title='spm fwhm=8', dim=1,
bg_img=anatimg, threshold=2, vmax=8, cmap='viridis', display_mode='y', cut_coords=(-45, -30, -15, 0, 15));
Now, let’s see the results using the glass brain plotting method.
from nilearn.plotting import plot_glass_brain
plot_glass_brain(
'/output/datasink/2ndLevel/spm_con_0005_fwhm4/spmT_0001_thr.nii', colorbar=True,
threshold=2, display_mode='lyrz', black_bg=True, vmax=10, title='spm_fwhm4');
plot_glass_brain(
'/output/datasink/2ndLevel/ants_con_0005_fwhm4/spmT_0001_thr.nii', colorbar=True,
threshold=2, display_mode='lyrz', black_bg=True, vmax=10, title='ants_fwhm4');
plot_glass_brain(
'/output/datasink/2ndLevel/spm_con_0005_fwhm8/spmT_0001_thr.nii', colorbar=True,
threshold=2, display_mode='lyrz', black_bg=True, vmax=10, title='spm_fwhm8');
plot_glass_brain(
'/output/datasink/2ndLevel/ants_con_0005_fwhm8/spmT_0001_thr.nii', colorbar=True,
threshold=2, display_mode='lyrz', black_bg=True, vmax=10, title='ants_fwhm8');
